CF838680

Overview
NameCF838680
Unique NameCF838680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 51/171 (29.82%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  193 QLFHKNGAKVVIADVQDNLGQALADKLGHQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCN-IPANYYGVSKFGILGLVKSLAAELGRYGIRVDCVS 699
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   ++++AV+  G +   + AA +M  R+RG I+          + + G    +    Y  +K GI+G+ K+ A EL   GIRV+ ++
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--------NMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIA 184          
BLAST of CF838680 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  193 QLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYXXXXXXXACTEIEGLCNIPANYYGVSKFGILGLVKSLAAE-LGRYGIRVDCV 696
            Q F    A VV+AD+ +  G+A+  K  +  + ++  D++NE    N + + V KFG LD+L+N   N        I +   SD  ++L VN  G FL++KHA + M+   +G I+        +   +    +IPA  Y  SK G+L          + ++ IRV+CV
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQTDITNEPACQNAILSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYMLKSGKGNII-----NTCSVGGVVAWPDIPA--YNASKGGVLQTDAFYRPSIIAKHNIRVNCV 181          
The following BLAST results are available for this feature:
BLAST of CF838680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
Y1350_MYCTU5.023e-1229.82Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
BACC_BACAM5.553e-1130.18Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838680 ID=CF838680; Name=CF838680; organism=Citrus sinensis; type=EST; length=883bp
GGAAATAATCACCATCCAAACCTTTTCTTTTACAATCTTGATTGAGTTTC
CCGTTTTTGAGGAAATTTTTTTACACAGGCTTGTAGTACTACTGCAGCAG
CACCCTGCGAAAGGTATCAACTAAGCATTCGGTTACAAGGCAGAGTGGCA
ATCATTACTGGCGGAGCAAGCGGGATCGGAGCATCTGCGGCTCAGCTTTT
CCACAAAAATGGAGCCAAAGTTGTCATAGCCGATGTGCAAGATAATCTTG
GCCAAGCCCTAGCCGATAAGCTAGGCCACCAGGATGTCTGCTACATCCAT
TGTGATGTATCAAATGAAAGGGAAGTCATCAATCTTGTTGATACCACCGT
TGCTAAATTCGGAAAGCTCGACATCCTGGTCAATAGCGGATGCAATCTTG
AGTATCGTGGCTTCGTGAGCATTTTGGACACCCCAAAGTCCGATCTAGAA
CGTTTACTGGCTGTGAACACAATTGGTGGTTTCTTAGTAGCCAAGCATGC
TGCAAGAGTCATGGTGCCACGCCGCAGAGGTTGCATATTGTATACAACGG
GTACAGGCACTACTGCTTGTACGGAAATTGAAGGTTTGTGCAATATTCCA
GCTAATTATTATGGAGTGTCAAAATTTGGGATCTTGGGACTTGTCAAGAG
CTTAGCGGCAGAGCTTGGACGGTATGGAATAAGAGTAGATTGCGTATCGC
ATACTTATGGCTTGGCAATGGCTGAAGCGATAGCATCAATAGCAAACGCT
GCGCTTTACAATATGGCTAAAGATGATGATACAAGTTATGTGGGTAAGCA
AAATCTTCTTGTCAATGGAGGATTCAGATGAGAGTTGTGAATCCTACCCT
CCGAGAGAGCTTTCAATCGATGAAAAAAGTTTC
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