CF838698

Overview
NameCF838698
Unique NameCF838698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig654 contig Csv1_Contig654:310..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: INVS_DANRE (Inversin OS=Danio rerio GN=invs PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = -1
Query:  328 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 693
            ++ S VH  A  GD   L   +   A +D ED  GRT L +      + CA++LL+AGA ++  D ++ TALH AA  G    + LLL   A   L++++  TP+ +A  +S    L LL K
Sbjct:    7 QNPSQVHAAAVNGDKNTLHKLITESALRDSEDQFGRTPLMYCVLADRLDCAEVLLKAGAGINKTDHSQRTALHLAAQKGNVRFMKLLLSRHADWRLKDLEEMTPLHLASRHSSSKPLSLLLK 128          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: UACA_CANFA (Uveal autoantigen with coiled-coil domains and ankyrin repeats OS=Canis familiaris GN=UACA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = -1
Query:  334 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 693
            E  S  H  AS G+ E L   L  G D    D+ GR ALH A  YG   C Q LL+     +  D    TALH AA       + LL ++GA+V  +++DG+TP+ +A    +  + +LL
Sbjct:   69 EGRSAFHVVASKGNLECLNAILIHGVDITTSDTAGRNALHLAAKYGHALCLQKLLQYNCPTEHADLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDVDGRTPLVLATQMCRPAICQLL 188          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  367 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN--TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 615
            D D ED++GRTA+HFA G G  +C + L EAGA+V   ++     T LH A GYGR   V  LLE GA     +  G+TP+++ +
Sbjct:  152 DPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQ 236          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: RAI14_RAT (Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = -1
Query:  334 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDE--SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 810
            WN  D   +L +A+     GDA   A   G   A    ++ E  +  H  A+ G  E LK  +  G D   +DS G +ALH A   G  +  + LL+  +  +++D    TALHYAA  G  + V +L E+ + + L+++DG  P+ VA  N   +    L
Sbjct:   16 WNKND--DRLLQAVE---NGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLKVMVTHGVDVTAQDSSGHSALHIAAKNGHPEYIKKLLQYKSPAESVDNLGKTALHYAAAQGSLQAVQVLCEHKSPINLKDLDGNIPLLVAIQNGHSEACHFL 171          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ANKR6_HUMAN (Ankyrin repeat domain-containing protein 6 OS=Homo sapiens GN=ANKRD6 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = -1
Query:  334 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 690
            D++ +H    VG+ E +   +  G   D +D +G TALH A  +G  + A++L++AGANV A +K  NTALH A      +   +LL  G+   L+N  G T + VA   +   +++LL
Sbjct:   75 DQTALHRATVVGNTEIIAALIHEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSRADLKNNAGDTCLHVAARYNHLSIIRLL 193          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ANKR5_HUMAN (Ankyrin repeat domain-containing protein 5 OS=Homo sapiens GN=ANKRD5 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = -1
Query:  334 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 717
            D++E+V +     ++     GD   LK A  +G   D +D+  +T L  AC  G +   + LLE GANV+A D    T LH+A   G+++ V LL+E+GA +   +++  TP++ A  + + D +K L
Sbjct:  487 DDSEKVFSN----INIITKAGDLASLKKAFESGIPVDMKDNYYKTPLMTACASGNIDVVKFLLEKGANVNATDNFLWTPLHFACHAGQQDIVELLVESGALIDAASINNSTPLNRAIESCRLDTVKYL 610          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ACBD6_RAT (Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = -1
Query:  337 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 810
            WN + V +K G+      GG   +S  +      E +  ED++I  +          K   +   D +  D EGR  LH+AC  G  +  ++LL+  A ++  D    TALHYAA     + V LLL++GA  TL++ DG  P +V    +   VL+L
Sbjct:  125 WNPQ-VSEKKGKEGSSGFGGPVVSSLYHE-----ETIREEDKNIFDYCRENNIDHITKAIKSKTVDVNMTDEEGRALLHWACDRGHKELVKVLLQCEAGINCQDNEGQTALHYAAACEFSDIVELLLQSGADPTLRDQDGCLPEEVTGCKAVSLVLQL 276          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: Y580_RICFE (Putative ankyrin repeat protein RF_0580 OS=Rickettsia felis GN=RF_0580 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = -1
Query:  304 HTASVGD-AEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL*NIG 672
            H A+  +  E ++  L  GAD + +DS G +ALH      ++K A++LL  GA+V+A D  ++T LH   G    E    LL+NGA V ++N +  TP+D A L    ++ +L  K      IG
Sbjct:  113 HAATFNENIEAMELLLKKGADINSKDSFGASALHGTIYNNKLKAAELLLNHGADVNAKDNYEDTILHNIIGTNNIEAAKFLLQNGADVNIENNNNFTPLDRAILGQHKELAELFLKSGATIKIG 236          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  367 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 711
            A +V +E E+     A   D + L   L    D D  D  GRTAL F  G G  KC ++L EAGA++D  D +   TALH AAGY R E V  L+E GA + +++  G T +++A+
Sbjct:  121 AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 235          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: RIPK4_MOUSE (Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  334 NEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 696
            +ED+ + +H  A  GD    +  L   A  +E D EGRT +H AC +G+    + LL  G +V    K+    LHYAA  G    V LL +  G +V  Q +DG+TP+ +A     + V ++L
Sbjct:  503 DEDQWTALHFAAQNGDEASTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRTLLRRGVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARIL 625          
The following BLAST results are available for this feature:
BLAST of CF838698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
INVS_DANRE6.191e-1235.25Inversin OS=Danio rerio GN=invs PE=2 SV=1[more]
UACA_CANFA8.086e-1235.83Uveal autoantigen with coiled-coil domains and ank... [more]
SR43C_ORYSJ8.086e-1243.53Probable signal recognition particle 43 kDa protei... [more]
RAI14_RAT8.086e-1231.06Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2[more]
ANKR6_HUMAN8.086e-1234.45Ankyrin repeat domain-containing protein 6 OS=Homo... [more]
ANKR5_HUMAN8.086e-1232.81Ankyrin repeat domain-containing protein 5 OS=Homo... [more]
ACBD6_RAT1.056e-1131.01Acyl-CoA-binding domain-containing protein 6 OS=Ra... [more]
Y580_RICFE1.379e-1134.68Putative ankyrin repeat protein RF_0580 OS=Rickett... [more]
SR43C_ARATH1.379e-1139.66Signal recognition particle 43 kDa protein, chloro... [more]
RIPK4_MOUSE1.379e-1134.15Receptor-interacting serine/threonine-protein kina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838698 ID=CF838698; Name=CF838698; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTAACCATTGCATATTTGACATAATGAAGCAATAATTTGTAAAAG
GACACAAATGTATCATAACTGTAATTAAAGAAACTAAGACATTAACATTC
CCCACAGATAACTCATTCTGGGGAAGAGATTGTTTATGATATAAAATTTT
AATGGTAGCAATCAGACAGTAACAAACAGAGCATTGACAAAAGCATCAAG
TCGTGATGACAACCTAATGCCTAACCGGAGTAGATTCATCCAACACACTG
AAATGCCTATAAAATTGCCGAAATCCACCATTCAGATGCTGACTTCCCAA
CAATCCTATATTTTACAGGAAAGCATCCTTCTCCAAAAGCTTTAGCACAT
CATGTTGGCTATTGAGCTTGGCAACATCTATGGGAGTCTTGCCATCCATG
TTCTGCAGAGTTACAGCAGCACCGTTCTCCAACAGAAGGGCTACACATTC
CTTCCTGCCATATCCGGCTGCATAATGTAGGGCAGTGTTCTTGTTCTTAT
CCAAGGCATCCACATTTGCTCCGGCCTCAAGTAGGATTTGAGCACACTTC
ACCTCACCATATCCGCAGGCAAAATGCAATGCTGTCCTTCCTTCTGAATC
TTCCTCATCTTTATCAGCACCAGCTGCCAATGCATTTTTCAAACCCTCAG
CATCACCAACACTGGCAGTGTGATGAACAATTGACTCATCCTCATTTCCC
ACTTCTTCTGCTTCATCTGCCCCCGCATTATCAGCAGAAGTGGTCGCATC
CCCACCAACTGCAAGACCCATTGCTTCACCCAATTTCTGCAAAACATCTT
TATCATTCCAGTACTTCATCATAGCAGATGGTCCACCAGACTCTATCTCA
TC
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