CF838698

Overview
NameCF838698
Unique NameCF838698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: LITD_LATTR (Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  370 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 702
            V + + +++H   S G    +K  L  G++ +E+  EG T+LH A    E + A +L+E GA+++A   +  T LH AA  GRK  V  LLE GA +  +  DG T + +A
Sbjct:  737 VADGNLTVLHLAVSTGQINIIKELLKRGSNIEEKTGEGYTSLHIAAMRKEPEIAVVLIENGADIEARSADNLTPLHSAAKIGRKSTVLYLLEKGADIGAKTADGSTALHLA 847          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: GABP1_MOUSE (GA-binding protein subunit beta-1 OS=Mus musculus GN=Gabpb1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  331 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 684
            S +H  A  G     +  L AG  +D      RT LH A   G     ++LL+ GA+V+A D  K TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ ++L+
Sbjct:   40 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 157          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: GABP1_HUMAN (GA-binding protein subunit beta-1 OS=Homo sapiens GN=GABPB1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  331 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 684
            S +H  A  G     +  L AG  +D      RT LH A   G     ++LL+ GA+V+A D  K TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ ++L+
Sbjct:   40 SPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 157          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: GABP1_BOVIN (GA-binding protein subunit beta-1 OS=Bos taurus GN=GABPB1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  331 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 684
            S +H  A  G     +  L AG  +D      RT LH A   G     ++LL+ GA+V+A D  K TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ ++L+
Sbjct:   40 SPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 157          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  367 EEVGNEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 708
            EE  NE +   +H  A  G+ E L   +  G   +  DSEGRT LH+A   G +  A+ L++  A+V+A D    T+LHYA    R+     L++  A  T+++ DG +P+D+ +
Sbjct:  211 EESDNELKIDAIHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDKNADVNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLDLCE 325          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  373 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 810
            WN + V +K G+      GG   +S  +      E +  ED++I  +          K   +  AD +  D EGR  LH+AC  G  +  ++LL+  A ++  D    TALHYAA     + V LLL++GA  TL++ DG  P +V
Sbjct:  125 WNPQ-VSEKKGKEGSSGFGGPVVSSLYHE-----ETIREEDKNIFDYCRENNIDHIAKAIKSKAADVNMTDEEGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLPEEV 264          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: AKD1A_HUMAN (Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 40/133 (30.08%), Postives = 65/133 (48.87%), Query Frame = -1
Query:  334 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 732
            ++   D  +++G    +  H  A  G  + L   + +G D + +D EG TALH A G G +   Q L++ G +++  +    TALH AAG    +CV LLL  G+ V        + +  A L+   DV ++L
Sbjct:  148 EDVALDHVDKLGR---TAFHRAAEHGQLDALDFLVGSGCDHNVKDKEGNTALHLAAGRGHMAVLQRLVDIGLDLEEQNAEGLTALHSAAGGSHPDCVQLLLRAGSTVNALTQKNLSCLHYAALSGSEDVSRVL 277          

HSP 2 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = -1
Query:  334 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 693
            E  + +H  A  G    L+  +  G D +E+++EG TALH A G     C Q+LL AG+ V+AL +   + LHYAA  G ++   +L+  G    + +  G +P+ +A  ++   +++LL
Sbjct:  191 EGNTALHLAAGRGHMAVLQRLVDIGLDLEEQNAEGLTALHSAAGGSHPDCVQLLLRAGSTVNALTQKNLSCLHYAALSGSEDVSRVLIHAGGCANVVDHQGASPLHLAVRHNFPALVRLL 310          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 38/115 (33.04%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  367 EEVGNEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 708
            EE  NE +   +H  A  G+ E L  ++ +G   +  DSEGRT LH+A   G +  A++L++  A+V+A D    T LHYA    R+     L++  A    ++ DG +P+D+ +
Sbjct:  226 EESENELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNADVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCE 340          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: Y045_METMA (Putative ankyrin repeat protein MM_0045 OS=Methanosarcina mazei GN=MM_0045 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  328 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 630
            + AGAD + +D+ G+TAL  A   G     ++L+ AGA+++  DKN NTAL YAA  G ++ V LL+E GA++ + +  G T +  +    + D+++LL K
Sbjct:  220 IKAGADLNIQDNSGKTALVAATKIGHKGIVELLVNAGADLNLQDKNGNTALIYAADRGYRDIVNLLIEGGASLNIPDEAGLTALMFSAQTGRKDIVELLIK 320          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: DAPK1_MOUSE (Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = -1
Query:  334 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 609
            D +D  G TALH A  YG     Q+L   G+N D  DK + T LH AA +G       L E G  V ++N +G+TP+  A     HD+++ L
Sbjct:  439 DVKDKSGETALHVAARYGHADVVQLLCSFGSNPDFQDKEEETPLHCAAWHGYYSVAKALCEVGCNVNIKNREGETPLLTASARGYHDIVECL 530          
The following BLAST results are available for this feature:
BLAST of CF838698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
LITD_LATTR1.379e-1135.14Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredec... [more]
GABP1_MOUSE1.379e-1134.75GA-binding protein subunit beta-1 OS=Mus musculus ... [more]
GABP1_HUMAN1.379e-1134.75GA-binding protein subunit beta-1 OS=Homo sapiens ... [more]
GABP1_BOVIN1.379e-1134.75GA-binding protein subunit beta-1 OS=Bos taurus GN... [more]
ACBP1_ARATH1.801e-1133.91Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
ACBD6_MOUSE1.801e-1132.19Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
AKD1A_HUMAN2.353e-1130.08Ankyrin repeat and death domain-containing protein... [more]
ACBP2_ARATH2.353e-1133.04Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
Y045_METMA3.073e-1137.62Putative ankyrin repeat protein MM_0045 OS=Methano... [more]
DAPK1_MOUSE3.073e-1138.04Death-associated protein kinase 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838698 ID=CF838698; Name=CF838698; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTAACCATTGCATATTTGACATAATGAAGCAATAATTTGTAAAAG
GACACAAATGTATCATAACTGTAATTAAAGAAACTAAGACATTAACATTC
CCCACAGATAACTCATTCTGGGGAAGAGATTGTTTATGATATAAAATTTT
AATGGTAGCAATCAGACAGTAACAAACAGAGCATTGACAAAAGCATCAAG
TCGTGATGACAACCTAATGCCTAACCGGAGTAGATTCATCCAACACACTG
AAATGCCTATAAAATTGCCGAAATCCACCATTCAGATGCTGACTTCCCAA
CAATCCTATATTTTACAGGAAAGCATCCTTCTCCAAAAGCTTTAGCACAT
CATGTTGGCTATTGAGCTTGGCAACATCTATGGGAGTCTTGCCATCCATG
TTCTGCAGAGTTACAGCAGCACCGTTCTCCAACAGAAGGGCTACACATTC
CTTCCTGCCATATCCGGCTGCATAATGTAGGGCAGTGTTCTTGTTCTTAT
CCAAGGCATCCACATTTGCTCCGGCCTCAAGTAGGATTTGAGCACACTTC
ACCTCACCATATCCGCAGGCAAAATGCAATGCTGTCCTTCCTTCTGAATC
TTCCTCATCTTTATCAGCACCAGCTGCCAATGCATTTTTCAAACCCTCAG
CATCACCAACACTGGCAGTGTGATGAACAATTGACTCATCCTCATTTCCC
ACTTCTTCTGCTTCATCTGCCCCCGCATTATCAGCAGAAGTGGTCGCATC
CCCACCAACTGCAAGACCCATTGCTTCACCCAATTTCTGCAAAACATCTT
TATCATTCCAGTACTTCATCATAGCAGATGGTCCACCAGACTCTATCTCA
TC
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