CF838698

Overview
NameCF838698
Unique NameCF838698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ANKR1_XENLA (Ankyrin repeat domain-containing protein 1 OS=Xenopus laevis GN=ankrd1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = -1
Query:  370 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 708
            E +G+ D+      A       ++  LA G D +  D   RTALH AC  G     + L+EAGAN++  D  ++TALH+    G  E + LLL  GAA+  ++    TP+ VA
Sbjct:  113 ETIGDVDQMTFFKAALDNKMSIIEKYLADGGDPNTCDEYKRTALHRACSEGHTAIVEKLIEAGANIEFKDMLESTALHWTCRGGSVETLKLLLNKGAAINARDKLLSTPLHVA 225          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: AND1A_MACFA (Ankyrin repeat and death domain-containing protein 1A (Fragment) OS=Macaca fascicularis GN=ANKDD1A PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 40/133 (30.08%), Postives = 63/133 (47.37%), Query Frame = -1
Query:  334 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 732
            ++   D  +++G    +  H  A  G  + L   + +G D   +D EG TALH A G G +   Q L++ G +++  +    TALH AAG     CV LLL  G+ V        + +  A L+   DV ++L
Sbjct:  110 EDVALDHVDKLGR---TAFHRAAEHGQLDALDFLVGSGCDHSVKDKEGNTALHLAAGRGHMAVLQRLVDIGLDLEEQNAEGLTALHAAAGGTHPHCVRLLLRAGSTVNALTQKNLSCLHYAALSGSEDVSRVL 239          
BLAST of CF838698 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 44/146 (30.14%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  373 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 810
            WN + + +K G+      GG   +S  +      E +  ED++I  +          K   +   D + +D EGR  LH+AC  G  +   +LL+  A+++  D    TALHYA+     + V LLL++GA  TL++ DG  P +V
Sbjct:  125 WNPQ-IPEKKGKEANTGFGGPVISSLYHE-----ETIREEDKNIFDYCRENNIDHITKAIKSKNVDVNVKDEEGRALLHWACDRGHKELVTVLLQHRADINCQDNEGQTALHYASACEFLDIVELLLQSGADPTLRDQDGCLPEEV 264          
The following BLAST results are available for this feature:
BLAST of CF838698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ANKR1_XENLA8.940e-1135.40Ankyrin repeat domain-containing protein 1 OS=Xeno... [more]
AND1A_MACFA8.940e-1130.08Ankyrin repeat and death domain-containing protein... [more]
ACBD6_HUMAN8.940e-1130.14Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06F10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838698 ID=CF838698; Name=CF838698; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTAACCATTGCATATTTGACATAATGAAGCAATAATTTGTAAAAG
GACACAAATGTATCATAACTGTAATTAAAGAAACTAAGACATTAACATTC
CCCACAGATAACTCATTCTGGGGAAGAGATTGTTTATGATATAAAATTTT
AATGGTAGCAATCAGACAGTAACAAACAGAGCATTGACAAAAGCATCAAG
TCGTGATGACAACCTAATGCCTAACCGGAGTAGATTCATCCAACACACTG
AAATGCCTATAAAATTGCCGAAATCCACCATTCAGATGCTGACTTCCCAA
CAATCCTATATTTTACAGGAAAGCATCCTTCTCCAAAAGCTTTAGCACAT
CATGTTGGCTATTGAGCTTGGCAACATCTATGGGAGTCTTGCCATCCATG
TTCTGCAGAGTTACAGCAGCACCGTTCTCCAACAGAAGGGCTACACATTC
CTTCCTGCCATATCCGGCTGCATAATGTAGGGCAGTGTTCTTGTTCTTAT
CCAAGGCATCCACATTTGCTCCGGCCTCAAGTAGGATTTGAGCACACTTC
ACCTCACCATATCCGCAGGCAAAATGCAATGCTGTCCTTCCTTCTGAATC
TTCCTCATCTTTATCAGCACCAGCTGCCAATGCATTTTTCAAACCCTCAG
CATCACCAACACTGGCAGTGTGATGAACAATTGACTCATCCTCATTTCCC
ACTTCTTCTGCTTCATCTGCCCCCGCATTATCAGCAGAAGTGGTCGCATC
CCCACCAACTGCAAGACCCATTGCTTCACCCAATTTCTGCAAAACATCTT
TATCATTCCAGTACTTCATCATAGCAGATGGTCCACCAGACTCTATCTCA
TC
back to top