CF838702

Overview
NameCF838702
Unique NameCF838702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  292 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 2 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   64 MQIFAKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLRLRGG 291
            M I  KTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 3 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  520 MHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 741
            M I VKTLTGK I L ++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LR
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALR 74          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  292 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   64 MQIFAKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLRLRGG 291
            M +  KTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ+ D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 3 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/74 (50.00%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  520 MHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 741
            M + VKTLTGK I+++++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LR
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLR 74          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   79 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            K L G    + V +S T+  +K +I  K G+P  QQRL      LQDG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:    8 KMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          

HSP 2 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  304 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLR-LRGGMHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 741
            VK L G    + V +S T+  +K +I  K G+P  QQRL      L+DG TL    +   ST+ LV++     + I V+   G +   +V  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLR
Sbjct:    7 VKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLR 153          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  298 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRL------RGGMHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 726
            + V++     +T +    D++  +K  ++ K  +P   Q L+   K L+  R+L  Y I KE T+HL L++         + +       K   LQV  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L
Sbjct:   10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158          

HSP 2 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 47/146 (32.19%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  100 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            +T +    D++  +K  ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ + DY I+K + L L     GG
Sbjct:   20 MTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   79 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLQDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            K L G    + + SS ++  +KA+I  K G+   QQRL    +G  LQD   LA   +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:    8 KMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          

HSP 2 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  289 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLVDYNIQKESTLHLVL-RLRGGMHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 741
            G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   L    +   ST+ LV+ +    + I V+   G++ T +V  + T+ ++K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLR
Sbjct:    2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  100 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            +T +   SD +  +   I+ +  +    Q L+   K L+  R L+ Y I KE+T+HL L++         + +      G+   L V  S ++  VK  I++   +PP +Q +   GK+LEDG+ + DYNI+  S L L     GG
Sbjct:   16 MTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          

HSP 2 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  328 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRL------RGGMHIFVKTLTGKTITLQVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 726
            +T +   SD +  +   I+ +  +    Q L+   K L+  R L  Y I KE+T+HL L++         + +      G+   L+V  S ++  VK  I++   +PP +Q +   GK+LEDG+ +ADYNI+  S L L
Sbjct:   16 MTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFL 154          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UCRP_BOVIN (Ubiquitin cross-reactive protein OS=Bos taurus GN=ISG15 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 1
Query:   79 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LQDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            K L G+ I + +  S T+  +K  I  K  +P  QQRL     +  LQ+G  L    ++  ST+ LV++    + I V+   G++   EV+   T+  +K ++  KE +  DQ  L F G+ ++D   L +Y + K  T+ + LRLRGG
Sbjct:    8 KMLGGQEILVPLRDSMTVSELKQFIAQKINVPAFQQRLAHLDSREVLQEGVPLVLQGLRAGSTVLLVVQ--NCISILVRNDKGRSSPYEVQLKQTVAELKQQVCQKERVQADQFWLSFEGRPMDDEHPLEEYGLMKGCTVFMNLRLRGG 154          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: UBD_MOUSE (Ubiquitin D OS=Mus musculus GN=Ubd PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 43/148 (29.05%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   94 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLQDGRTLADYNIQKESTLHLVLRL----RGGMQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            + +T E   +D +  +   I+ +  +    Q L+   K L+  R L+ Y I KE+T+HL L++       + +F+      G+   L V  S ++  VK  I+    + P +Q +   GK+LEDG+ + DYNI+  S L L     GG
Sbjct:   15 RLMTFETTENDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRKLSSYGIDKETTIHLTLKVVKPSDEELPLFLVESKNEGQRHLLRVRRSSSVAQVKEMIESVTSVIPKKQVVNCNGKKLEDGKIMADYNIKSGSLLFLTTHCTGG 162          
BLAST of CF838702 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  292 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLVDYNIQKESTLHLVLRLRGG 519
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CF838702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBL1_SCHPO6.665e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.257e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UCRP_MOUSE3.657e-1534.46Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UBD_HUMAN4.044e-1431.54Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_HUMAN1.537e-1334.67Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
UBD_RAT4.943e-1229.45Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]
UCRP_BOVIN1.438e-1131.54Ubiquitin cross-reactive protein OS=Bos taurus GN=... [more]
UBD_MOUSE4.185e-1129.05Ubiquitin D OS=Mus musculus GN=Ubd PE=2 SV=1[more]
ANUB1_HUMAN7.138e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838702 ID=CF838702; Name=CF838702; organism=Citrus sinensis; type=EST; length=741bp
AAAAAAACCCTTAAAAAAGATATTTAGTTTAGATACCGAGGCTCCCAATC
TCAGCCTTCCAACATGCAGATCTTTGCGAAAACTTTGACCGGCAAGACCA
TCACTCTCGAGGTGGAGAGCTCCGACACGATCGACAACGTCAAGGCTAAG
ATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGGCTGATCTTCGC
CGGAAAGCAGCTCCAGGACGGGCGCACCTTGGCGGATTACAACATCCAGA
AGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCAGATC
TTCGTCAAGACTCTGACCGGGAAGACTATCACCCTGGAGGTGGAGAGCTC
CGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCC
CCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGC
CGCACCCTGGTCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGT
GTTGCGCCTGAGGGGAGGAATGCACATCTTCGTCAAGACGTTGACCGGGA
AGACGATCACCCTGCAGGTGGAGAGCTCCGACACGATCGACAACGTGAAG
GCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCAT
CTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAACA
TTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGT
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