CF838703

Overview
NameCF838703
Unique NameCF838703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A5_TOBAC (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.121e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            ++D  IS+  + + L +  +R LCE AKEIL EESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:   14 NLDEQISQLMQCKPLSEPDVRALCEKAKEILAEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGQCPDTNYLFMG 89          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPX1_PARTE (Serine/threonine-protein phosphatase PP-X homolog 1 OS=Paramecium tetraurelia GN=Ppx1 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.490e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D WI   K G++L +  +++LC  AK+IL  E NV  V +PVT+CGDIHGQF+DLM+LF  GG  PETNY+F+G
Sbjct:    3 DIDQWIETLKNGENLKETDVKILCNKAKDILNNEDNVIRVEAPVTICGDIHGQFYDLMELFKVGGDVPETNYLFLG 78          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A_TOBAC (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.490e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            ++D  I++  + + L +  +R LCE AKEIL+EESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:   12 NLDEQIAQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMG 87          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSJ (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.946e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:   89 MDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D  I +  + + L +  +R LCE AKEIL+EESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:    8 LDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMG 82          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSI (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.946e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:   89 MDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D  I +  + + L +  +R LCE AKEIL+EESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:    8 LDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMG 82          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP11_YEAST (Serine/threonine-protein phosphatase PP1-1 OS=Saccharomyces cerevisiae GN=SIT4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.946e-19
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:   92 DHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHT-GGHEPETNYIFMG 313
            D W+   KK Q L ++ ++ LCE  KE+L+EESN+ PV +PVTVCGDIHGQFHDL++LF T GG   + NYIF+G
Sbjct:    7 DEWLETIKKCQALTENEMKQLCEMVKELLMEESNIQPVQTPVTVCGDIHGQFHDLLELFRTAGGFPDDINYIFLG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPX2_PARTE (Serine/threonine-protein phosphatase PP-X homolog 2 OS=Paramecium tetraurelia GN=Ppx2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.541e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D WI   K G++L +  +++LC  AK+IL  E NV  V +PVT+CGDIHGQF DLM+LF  GG  PETNY+F+G
Sbjct:    3 DIDQWIETLKNGENLKETDVKILCNKAKDILNNEDNVIRVEAPVTICGDIHGQFQDLMELFKVGGDVPETNYLFLG 78          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa GN=PP2A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.541e-19
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D++  IS+  + + L +  ++ LCE AKEIL++ESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:   13 DLNEQISQLMQCKPLSEQQVKELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMG 88          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.541e-19
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   89 MDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D WI      + L +  ++ LCE A+E+L +ESNV PV  PVTVCGDIHGQFHDLM+LF  GG  P+TNY+FMG
Sbjct:   28 LDGWIESLMNCKQLAESDVQRLCEKAREVLQDESNVQPVKCPVTVCGDIHGQFHDLMELFKIGGSCPDTNYLFMG 102          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.319e-19
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  143 LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            ++ LCE AKEIL+EESNV PV SPVT+CGDIHGQFHDL++LF  GG  P+TNY+FMG
Sbjct:   33 VKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMG 89          
The following BLAST results are available for this feature:
BLAST of CF838703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
PP2A5_TOBAC5.121e-2060.53Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PPX1_PARTE1.490e-1955.26Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP2A_TOBAC1.490e-1959.21Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A2_ORYSJ1.946e-1960.00Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A2_ORYSI1.946e-1960.00Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP11_YEAST1.946e-1957.33Serine/threonine-protein phosphatase PP1-1 OS=Sacc... [more]
PPX2_PARTE2.541e-1955.26Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP2A_MEDSA2.541e-1957.89Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A1_NEUCR2.541e-1957.33Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A4_ORYSJ3.319e-1971.93Serine/threonine-protein phosphatase PP2A-4 cataly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838703 ID=CF838703; Name=CF838703; organism=Citrus sinensis; type=EST; length=315bp
TATTGAAAAATTTCCTGGGCCTTTCTCTCTCTGTGAACACAAAAACCCTA
ATTTCTTGGCCTTCATTTTCGTGGAAAATTGAATGGATATGGATCACTGG
ATATCCAAAGACAAAAAGGGCCAGCATCTTTTACAAGACTAGCTTCGGCT
CCTCTGCGAATACGCGAAAGAAATCCTTATTGAAGAGTCCAATGTGCATC
CTGTTAACAGTCCGGTCACTGTCTGTGGCGATATTCATGGCCAGTTTCAT
GACCTAATGAAACTTTTTCACACAGGAGGTCATGAACCAGAGACAAATTA
CATATTTATGGGTGA
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