CF838703

Overview
NameCF838703
Unique NameCF838703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSI (Putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.319e-19
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  143 LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            ++ LCE AKEIL+EESNV PV SPVT+CGDIHGQFHDL++LF  GG  P+TNY+FMG
Sbjct:   34 VKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMG 90          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4CA_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit A OS=Danio rerio GN=ppp4ca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + ++ ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:   10 DLDRQIEQLRRCELIKENEVKALCAKAREILVEESNVQSVDSPVTVCGDIHGQFYDLKELFRVGGEVPETNYLFMG 85          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A5_ARATH (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Arabidopsis thaliana GN=PP2A5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I +  + + L +  +++LCE+AK IL+EE NV PV  PVTVCGDIHGQF+DL++LF  GG  P+TNY+FMG
Sbjct:    7 DIDRQIEQLMECKALSETEVKMLCEHAKTILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSSPDTNYLFMG 82          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A2_YEAST (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH22 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   14 PGPFSLCEHKNPNFLAFIFVEN*MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            PG   + +HK+   L      N   +D WI    K + L +D +  LC+ A ++L  E NV P+N PVT+CGD+HGQFHDL++LF  GG  P+TNY+FMG
Sbjct:   54 PGSSGIADHKSSKPLKLTNT-NINQLDQWIEHLSKCEPLSEDDVARLCKMAVDVLQFEENVKPINVPVTICGDVHGQFHDLLELFKIGGPCPDTNYLFMG 152          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSJ (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  IS+ ++ + L +  +R LCE AK IL+EE NV PV  PVTVCGDIHGQF+DL++LF  GG  P+TNY+FMG
Sbjct:    6 DLDRQISQLRECKFLGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A1_ORYSI (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.662e-19
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  IS+ ++ + L +  +R LCE AK IL+EE NV PV  PVTVCGDIHGQF+DL++LF  GG  P+TNY+FMG
Sbjct:    6 DLDRQISQLRECKFLGEAEVRALCEQAKAILMEEWNVQPVRCPVTVCGDIHGQFYDLIELFRIGGDSPDTNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A1_YEAST (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH21 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.394e-19
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   14 PGPFSLCEHKNPNFLAFIFVEN*MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            PG   + +HK+   L  +   N   +D WI    K + L +D +  LC+ A ++L  E NV P+N PVT+CGD+HGQFHDL++LF  GG  P+TNY+FMG
Sbjct:   46 PGSSGIADHKSSKPLE-LNNTNINQLDQWIEHLSKCEPLSEDDVARLCKMAVDVLQFEENVKPINVPVTICGDVHGQFHDLLELFKIGGPCPDTNYLFMG 144          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A1_SCHPO (Minor serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.394e-19
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            ++D WI +  + + L ++ +  +C+ AKE+L  ESNV  V  PVTVCGDIHGQFHDLM+LF+ GG  P+TNY+FMG
Sbjct:    9 EVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLFMG 84          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.657e-19
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + ++ ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIDQLRRCELIKENEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_XENTR (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus tropicalis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
The following BLAST results are available for this feature:
BLAST of CF838703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
PP2A4_ORYSI3.319e-1971.93Putative serine/threonine-protein phosphatase PP2A... [more]
PP4CA_DANRE5.662e-1955.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A5_ARATH5.662e-1955.26Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP2A2_YEAST5.662e-1945.00Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_ORYSJ5.662e-1957.89Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A1_ORYSI5.662e-1957.89Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A1_YEAST7.394e-1945.00Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A1_SCHPO7.394e-1953.95Minor serine/threonine-protein phosphatase PP2A-1 ... [more]
PP4CB_DANRE9.657e-1955.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENTR1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838703 ID=CF838703; Name=CF838703; organism=Citrus sinensis; type=EST; length=315bp
TATTGAAAAATTTCCTGGGCCTTTCTCTCTCTGTGAACACAAAAACCCTA
ATTTCTTGGCCTTCATTTTCGTGGAAAATTGAATGGATATGGATCACTGG
ATATCCAAAGACAAAAAGGGCCAGCATCTTTTACAAGACTAGCTTCGGCT
CCTCTGCGAATACGCGAAAGAAATCCTTATTGAAGAGTCCAATGTGCATC
CTGTTAACAGTCCGGTCACTGTCTGTGGCGATATTCATGGCCAGTTTCAT
GACCTAATGAAACTTTTTCACACAGGAGGTCATGAACCAGAGACAAATTA
CATATTTATGGGTGA
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