CF838703

Overview
NameCF838703
Unique NameCF838703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_XENLA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_PONAB (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Pongo abelii GN=PPP4C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_MOUSE (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Mus musculus GN=Ppp4c PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_HUMAN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_BOVIN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus GN=PPP4C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I + ++ + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A2_ERYGR (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Erysiphe graminis subsp. hordei GN=PP2A-2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.647e-18
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:   89 MDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D WI      + L +  +  LCE A+E+L  ESNV PV  PVTVCGDIHGQFHDLM+LF  GG  P+TNY+FMG
Sbjct:   29 LDGWIENLMACKQLPEVDVLRLCEKAREVLHSESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMG 103          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2AB_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (Fragment) OS=Sus scrofa GN=PPP2CB PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  122 QHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            + L ++ +R LCE AKEIL +ESNV  V  PVTVCGD+HGQFHDLM+LF  GG  P+TNY+FMG
Sbjct:    5 KQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMG 68          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP4C_RABIT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Oryctolagus cuniculus GN=PPP4C PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.670e-18
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D  I +  + + + +  ++ LC  A+EIL+EESNV  V+SPVTVCGDIHGQF+DL +LF  GG  PETNY+FMG
Sbjct:    6 DLDRQIEQLLRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A_HELAN (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.670e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  110 DKKGQHL-----LQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D++ +HL     L + +R LC+ A+ IL+EE NV PV  PVTVCGDIHGQFHDL++LF  GG  P+TNY+FMG
Sbjct:    8 DRQIEHLMDCKPLPEEVRTLCDQARTILVEEWNVQPVKCPVTVCGDIHGQFHDLLELFRIGGSAPDTNYLFMG 80          
The following BLAST results are available for this feature:
BLAST of CF838703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
PP4C_XENLA1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RAT1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_PONAB1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_MOUSE1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_HUMAN1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_BOVIN1.261e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A2_ERYGR1.647e-1857.33Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2AB_PIG2.151e-1864.06Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP4C_RABIT3.670e-1855.26Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A_HELAN3.670e-1857.53Serine/threonine-protein phosphatase PP2A catalyti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838703 ID=CF838703; Name=CF838703; organism=Citrus sinensis; type=EST; length=315bp
TATTGAAAAATTTCCTGGGCCTTTCTCTCTCTGTGAACACAAAAACCCTA
ATTTCTTGGCCTTCATTTTCGTGGAAAATTGAATGGATATGGATCACTGG
ATATCCAAAGACAAAAAGGGCCAGCATCTTTTACAAGACTAGCTTCGGCT
CCTCTGCGAATACGCGAAAGAAATCCTTATTGAAGAGTCCAATGTGCATC
CTGTTAACAGTCCGGTCACTGTCTGTGGCGATATTCATGGCCAGTTTCAT
GACCTAATGAAACTTTTTCACACAGGAGGTCATGAACCAGAGACAAATTA
CATATTTATGGGTGA
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