CF838714

Overview
NameCF838714
Unique NameCF838714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_SALG2 (Adenine phosphoribosyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=apt PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 64/121 (52.89%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    7 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 369
            L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+E Y LEY  D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   47 LLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYSTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_LACLM (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=apt PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1
Query:   13 VERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 396
            V+  +DK I +V G EARGFI G P+A A+G  F P+RKP KLP EVI   Y  EYG D + MH  +++ G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G     VL+
Sbjct:   41 VQYARDKEIDMVVGPEARGFIIGCPVAFALGVGFAPVRKPGKLPREVIEATYEKEYGTDTLTMHSDSIKPGQRVLIVDDLLATGGTIAATIELVEKMGGVVVGCAFLIELDELKGREKIGNYDYKVLM 168          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_LACLS (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=apt PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1
Query:   13 VERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 396
            V+  +DK I +V G EARGFI G P+A A+G  F P+RKP KLP EVI   Y  EYG D + MH  +++ G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G     VL+
Sbjct:   41 VQYARDKEIDMVVGPEARGFIIGCPVAFALGVGFAPVRKPGKLPREVIEATYEKEYGTDTLTMHSDSIKPGQRVLIVDDLLATGGTIAATIELVEKMGGVVVGCAFLIELDELKGREKIGNYVYKVLM 168          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_SHEPW (Adenine phosphoribosyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=apt PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    7 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 393
            L VE YK++  + V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG DV+E+HV A+   ++ L+VDDL+ATGGT+ A ++L+  +G  V   A VI LP+L G +RL    L +L
Sbjct:   47 LLVEHYKEQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAITKEDKVLVVDDLLATGGTIEATVKLIRNLGGQVNHAAFVISLPDLGGEKRLETMDLELL 175          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_PSEHT (Adenine phosphoribosyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=apt PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 59/128 (46.09%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   10 FVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 393
            F+  YKD+  + + G E+RGFIFG P++ A+G  F+P+RKP KLP EV+ ++Y LEYG+D +E+HV A+  G++ L+VDDL+ATGGT+ A I+L++++G    + A V+ LPEL G +R+ +  + +L
Sbjct:   46 FIAAYKDQGFTKIIGTESRGFIFGAPLSYALGIPFIPVRKPGKLPREVVRQDYLLEYGEDTLELHVDAIVPGDKVLLVDDLLATGGTIEATIKLVQKLGGEATDAAFVVSLPELGGEKRIAKMGIKIL 173          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_STRGC (Adenine phosphoribosyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=apt PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 70/128 (54.69%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   13 VERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 396
            V+   DK I +V G EARGFI G P+A  +G  F P+RKP KLP EVIS +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++ER+G  V  CA +IEL ELKGRE +GE    VL+
Sbjct:   41 VQYATDKKIDMVVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIERLGGIVAGCAFLIELDELKGREVIGEYDYKVLM 168          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_DESOH (Adenine phosphoribosyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=apt PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   10 FVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 396
            F +RY+   I  + GI+ARG IFG P+A  +   FVP+RK  K+P   I   YSLEYG+ ++E+H  A+  GER ++VDDL+ATGGT+ A I L+E++G  VVECA VI+LP+LKGRE++ +  +F L+
Sbjct:   40 FYDRYRTMKIDKIVGIDARGLIFGAPLAYKLEVGFVPVRKKGKIPFRTIGAAYSLEYGESMVEIHEDAILKGERVVVVDDLIATGGTVKATIDLVEKLGGEVVECAFVIDLPDLKGREKIRDYKMFALM 168          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_NITMU (Adenine phosphoribosyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=apt PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   19 RYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 390
            RYK   I  VAGIE+RGFI G P+A  +G  FVP+RK  KLP E    +Y LEYG D +E+HV A+Q G+R L+VDDL+ATGGT  AA  L+  +G  VVEC+ VI+LP++ GR RL ++ L V
Sbjct:   43 RYKSMKIDKVAGIESRGFIIGAPVAYELGVGFVPVRKKGKLPAETRGRDYQLEYGSDRIEIHVDAIQKGDRVLLVDDLIATGGTAEAAAGLIHEMGGEVVECSFVIDLPDIGGRARLEDQGLKV 166          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_VIBCM (Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=apt PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 62/121 (51.24%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    7 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 369
            L VE+YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP + +++ Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G +RL
Sbjct:   45 LLVEKYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRQTVAQSYELEYGTDTLEIHVDAIKPGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRL 165          
BLAST of CF838714 vs. ExPASy Swiss-Prot
Match: APT_VIBCH (Adenine phosphoribosyltransferase OS=Vibrio cholerae GN=apt PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 62/121 (51.24%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    7 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 369
            L VE+YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP + +++ Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G +RL
Sbjct:   45 LLVEKYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRQTVAQSYELEYGTDTLEIHVDAIKPGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRL 165          
The following BLAST results are available for this feature:
BLAST of CF838714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SALG26.839e-3252.89Adenine phosphoribosyltransferase OS=Salmonella ga... [more]
APT_LACLM6.839e-3253.91Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_LACLS8.932e-3253.91Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_SHEPW1.167e-3151.94Adenine phosphoribosyltransferase OS=Shewanella pi... [more]
APT_PSEHT1.167e-3146.09Adenine phosphoribosyltransferase OS=Pseudoalterom... [more]
APT_STRGC1.524e-3154.69Adenine phosphoribosyltransferase OS=Streptococcus... [more]
APT_DESOH1.524e-3149.61Adenine phosphoribosyltransferase OS=Desulfococcus... [more]
APT_NITMU1.990e-3154.03Adenine phosphoribosyltransferase OS=Nitrosospira ... [more]
APT_VIBCM2.599e-3151.24Adenine phosphoribosyltransferase OS=Vibrio choler... [more]
APT_VIBCH2.599e-3151.24Adenine phosphoribosyltransferase OS=Vibrio choler... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06G03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838714 ID=CF838714; Name=CF838714; organism=Citrus sinensis; type=EST; length=715bp
CCGTATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCCGTTGTTGC
AGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGGCTA
TTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAG
GTTATTTCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATGGAGAT
GCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATC
TAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGAGCGA
GTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCAGAGCT
AAAGGGTCGGGAACGGCTGGGAGAGAAACCACTATTTGTTCTTGTAAGCT
AAACTTGACCTCAGGTTATGGTTTAAATGCAATGTTTGTGGACCATATGG
GTTTCTAGTCGCTCGGGCTCTGCTCAAAGCTTGAGAACTTCATAAAACCA
TCTGGTAATATAAGAGCAGTTTCATTGGCTTTTTATTTTATTTAAGACGT
TGGGGAAAGAGTGGTGGGGAAGCTGGGTTCTGTCTGCTATTGTTGGGTTT
AAGAATGATAGGCTTATGAAAAAATTCCATCTTCCCGTAAACAGCTGTAT
TTGATGCTTTTCAAATTATCTGGAGATTCTATCTGATGGTTGTTGATGTA
AAAAAAAAAAAAAAA
back to top