CF838720

Overview
NameCF838720
Unique NameCF838720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.767e-45
Identity = 101/203 (49.75%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 793
            W P T++GRLV+EGKI+S+++I+  +LPI E +I+D L+   L  EV+ +  VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVRRG   W    G  H+VP  V GK GSV V + PAP+G G+VA  V K VL+ AGI DV+T ++G T+T  NF +AT+  L  TY F+TP  W E R
Sbjct:   14 WQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWAEAR 215          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.684e-44
Identity = 92/204 (45.10%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 793
            +W P T +G LV+EGKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++IPVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   12 EWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR 214          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.423e-44
Identity = 90/204 (44.12%), Postives = 136/204 (66.67%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 793
            +W P T +G LV+ GKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++PVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   12 EWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWARKR 214          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.266e-43
Identity = 94/193 (48.70%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 763
            W P T LGR+V+EGKIR++++I+ ++L IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PVRRG   W      PH+VP  V+GK GSV V ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A F  L  TY F
Sbjct:    9 WEPKTALGRMVKEGKIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.654e-43
Identity = 96/204 (47.06%), Postives = 136/204 (66.67%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 793
            +W P TK+G+LV+EGKI S++++Y  ++ I E +IID L+ + +K EV+ I  VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVRRG   W    G  H++P  V+GK GS  V + PAP+G G+VA  V K +L +AGI DV++ SRG T+T  NF+ A +  L  TY F+TP  W   R
Sbjct:   12 EWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFIMAGYRALYNTYKFVTPVDWARRR 214          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.160e-43
Identity = 93/193 (48.19%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 763
            W P T+LGRLV+EGKIR++++I+ ++  IKE +I+D L+   LK E++ I  VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:    9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.821e-43
Identity = 93/200 (46.50%), Postives = 134/200 (67.00%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 781
            +W P TK+G+LV+EGKI S+++I+  + PI E +I+D L+  KLK EVM I  VQKQT AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPVRRG   W    G  H++P KV GK GSV V ++PAP+G G+V     K +L +AGI D ++ +RGST T  NF+KA +  L  TY F+TP  W
Sbjct:   12 EWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIKAGYNALYNTYKFVTPVDW 210          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 8.207e-43
Identity = 90/193 (46.63%), Postives = 132/193 (68.39%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 763
            W P T+LGR+V+EGKIR++++++ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+ AG+ DV+T +RG T+T  NF  A +  L  TY F
Sbjct:    9 WEPRTELGRMVKEGKIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.207e-43
Identity = 90/193 (46.63%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSS-----RGSTKTLGNFVKATFECL 745
            +W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+ +  VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRRG   W    GRPH++P ++TGKCGSV + + PAPRG G+VA    +KVL+ AGI+DV+T +     +G T+T  NF KATF+ L
Sbjct:    9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGETRTTINFAKATFDAL 200          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.072e-42
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 763
            W P T+LGR+V+EGKIR++++I+ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PVRRG   W      PH+VP  V GK GSV + ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:   25 WEPRTELGRMVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAPKGVGLVAGDVAKAVLRLAGIKDVWTKTRGDTRTTLNFAMAVYNALRNTYYF 216          
The following BLAST results are available for this feature:
BLAST of CF838720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
RS5_AERPE1.767e-4549.7530S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_SULSO5.684e-4445.1030S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_SULIN7.423e-4444.1230S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_PYRCJ1.266e-4348.7030S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_METS51.654e-4347.0630S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_PYRIL2.160e-4348.1930S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_SULTO2.821e-4346.5030S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_PYRAR8.207e-4346.6330S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]
RS5_METKA8.207e-4346.6330S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_PYRAE1.072e-4246.6330S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838720 ID=CF838720; Name=CF838720; organism=Citrus sinensis; type=EST; length=811bp
CTGTTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTCCTAACCCT
AAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCA
TTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACG
TGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAG
TCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAG
CAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACAC
GCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGC
AGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTC
GTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGA
GGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGA
TTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACC
GTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGT
TCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGG
TGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCG
ACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGTGTTTGTTGAA
GACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTTGTGA
AATCTCCATAC
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