CF838720
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42 Identity = 89/190 (46.84%), Postives = 133/190 (70.00%), Query Frame = 2 Query: 191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754 WVP TKLGRLV +GKI+++++ +LP+KE +I+D L+ L+D+V++I VQ+ T +G+RT+F+ VVG+ +G+VG+G + +VA AI+ AI AKL++ V+RG W G H++P KVTG GSV V ++P P+G GIVA V K+V++ AG+ DV++ ++G TKT NF KAT+E L KT Sbjct: 5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAKATYEALKKT 193
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42 Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 2 Query: 188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRE 787 +W+P T+LG+LV EG++ S+E+ LPI+E QIID L+ L+DEV+ I VQ+ T +G+R +F+A V+VG+ +G+VGLG +V AIR AI AKL + + RG W G PHTVP +VTGK GSV+V ++PAPRG GI A KVL+ AGI DV+T + G+T++ NF KATF+ L + P + +E Sbjct: 6 EWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQVNVMRLPVYCKE 206
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42 Identity = 90/191 (47.12%), Postives = 128/191 (67.02%), Query Frame = 2 Query: 188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754 +W+P T+LGRLV EG++ + E+ LPIKE+QIID L+ L+DEV+ I VQ+ T +G+R +F+ V+VG+ DG++G+G +V AI+ I AKL+V+ + RG W G+ HTVP KV+G GSV + ++PAPRG G+ A V KKV++ AGI DV+T + GST+T NF KAT+ LL T Sbjct: 9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAKATYNALLNT 198
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42 Identity = 92/187 (49.20%), Postives = 128/187 (68.45%), Query Frame = 2 Query: 191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745 WVP T+LG+LV EG++ S+++ LPI+E QIID L+ L+DEV+ I VQ+ T +G+R +F+A V+VG+ +G+VGLG +V AIR AI AKL++ +RRG W G PHTVP +VTGK GSV+V ++PAPRG GI A KVL+ AGI DV+T + G+T++ NF KAT++ L Sbjct: 7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42 Identity = 92/187 (49.20%), Postives = 128/187 (68.45%), Query Frame = 2 Query: 191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745 WVP T+LG+LV EG++ S+++ LPI+E QIID L+ L+DEV+ I VQ+ T +G+R +F+A V+VG+ +G+VGLG +V AIR AI AKL++ +RRG W G PHTVP +VTGK GSV+V ++PAPRG GI A KVL+ AGI DV+T + G+T++ NF KAT++ L Sbjct: 7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.021e-41 Identity = 93/199 (46.73%), Postives = 129/199 (64.82%), Query Frame = 2 Query: 191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 781 WVP T++G++V EGKI SL++I+ +LP+ E +I+D L+ LK E + + VQK T AG+R+RF+ VVVG+ DG VG+G +++ A+R A+ AKL++ PVRRG W + G PH++P V GK GSV V + PAP+G G+VA K VL+ AGI DV+T + G TKT NF KA L TY F+ P W Sbjct: 14 WVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.640e-41 Identity = 87/199 (43.72%), Postives = 133/199 (66.83%), Query Frame = 2 Query: 191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 781 W P TK+G+L++EGKI S+++++ +LPI E +I+D L+ KL+ +++ I VQKQT AG+ +R+K +V+G+ DG++ G +K++ AI+ AI AK+ +IPVRRG W G H++P V+GK GSV V ++PAP+G G+V V K L AG+ DV++ ++GST T NF+KA + L TY F+TP W Sbjct: 13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDW 210
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41 Identity = 88/188 (46.81%), Postives = 127/188 (67.55%), Query Frame = 2 Query: 188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745 +W P T+LGRLV+EG I S+++I+ PI E +IID L+ L++EV+ + VQ+ ++G++ F+ V VG+ DG+VGLG ++EV AIR A+ AK ++I VRRG WG GR HTVP KV+GK GSV V ++PAP G G+ V K +++ AGIDDV++ +RG T+T NF +ATF+ L Sbjct: 9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDAL 195
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41 Identity = 91/203 (44.83%), Postives = 132/203 (65.02%), Query Frame = 2 Query: 188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 790 +WVP T+LG+LV +G++ S+++ LPI+E +I+D L+ +L+DEV+ I VQ+ T +G+R +F+A V+VG+ DG VGLG +V AIR AI AK+++ ++RG W G PHTVP +V GK GSVTV + PAPRG G+ A +KVL+ AG+ DV+T + G T+T NF KAT+ L+ T P + ET Sbjct: 8 EWVPQTRLGKLVFDGQVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAKATYNALMNTGTVRRPIVFDET 209
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.812e-40 Identity = 88/191 (46.07%), Postives = 126/191 (65.97%), Query Frame = 2 Query: 188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754 +W+P+T LGR+V G+I S++++ PIKE QI+D L+ L+DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VG G +V AI+ AI+ AKL++I V RG W H++P +VTGK GSV V + PAP+G G+V +PKKVL AGI DV+ +RG T+T N+ KATFE L +T Sbjct: 7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAKATFEALKQT 196 The following BLAST results are available for this feature:
BLAST of CF838720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 489
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838720 ID=CF838720; Name=CF838720; organism=Citrus sinensis; type=EST; length=811bpback to top |