CF838720

Overview
NameCF838720
Unique NameCF838720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 89/190 (46.84%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            WVP TKLGRLV +GKI+++++    +LP+KE +I+D L+   L+D+V++I  VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +VA AI+ AI  AKL++  V+RG   W    G  H++P KVTG  GSV V ++P P+G GIVA  V K+V++ AG+ DV++ ++G TKT  NF KAT+E L KT
Sbjct:    5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAKATYEALKKT 193          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42
Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRE 787
            +W+P T+LG+LV EG++ S+E+     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  + RG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KATF+ L +      P + +E
Sbjct:    6 EWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQVNVMRLPVYCKE 206          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 90/191 (47.12%), Postives = 128/191 (67.02%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W+P T+LGRLV EG++ + E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ + RG   W    G+ HTVP KV+G  GSV + ++PAPRG G+ A  V KKV++ AGI DV+T + GST+T  NF KAT+  LL T
Sbjct:    9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAKATYNALLNT 198          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42
Identity = 92/187 (49.20%), Postives = 128/187 (68.45%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KAT++ L
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42
Identity = 92/187 (49.20%), Postives = 128/187 (68.45%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KAT++ L
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.021e-41
Identity = 93/199 (46.73%), Postives = 129/199 (64.82%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 781
            WVP T++G++V EGKI SL++I+  +LP+ E +I+D L+   LK E + +  VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG   W  + G PH++P  V GK GSV V + PAP+G G+VA    K VL+ AGI DV+T + G TKT  NF KA    L  TY F+ P  W
Sbjct:   14 WVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.640e-41
Identity = 87/199 (43.72%), Postives = 133/199 (66.83%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 781
            W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++ I  VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG   W    G  H++P  V+GK GSV V ++PAP+G G+V   V K  L  AG+ DV++ ++GST T  NF+KA +  L  TY F+TP  W
Sbjct:   13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDW 210          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 88/188 (46.81%), Postives = 127/188 (67.55%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            +W P T+LGRLV+EG I S+++I+    PI E +IID L+   L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++ AGIDDV++ +RG T+T  NF +ATF+ L
Sbjct:    9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDAL 195          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41
Identity = 91/203 (44.83%), Postives = 132/203 (65.02%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 790
            +WVP T+LG+LV +G++ S+++     LPI+E +I+D L+  +L+DEV+ I  VQ+ T +G+R +F+A V+VG+ DG VGLG     +V  AIR AI  AK+++  ++RG   W    G PHTVP +V GK GSVTV + PAPRG G+ A    +KVL+ AG+ DV+T + G T+T  NF KAT+  L+ T     P  + ET
Sbjct:    8 EWVPQTRLGKLVFDGQVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAKATYNALMNTGTVRRPIVFDET 209          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.812e-40
Identity = 88/191 (46.07%), Postives = 126/191 (65.97%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W+P+T LGR+V  G+I S++++     PIKE QI+D L+   L+DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V RG   W       H++P +VTGK GSV V + PAP+G G+V   +PKKVL  AGI DV+  +RG T+T  N+ KATFE L +T
Sbjct:    7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAKATFEALKQT 196          
The following BLAST results are available for this feature:
BLAST of CF838720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
RS5_ARCFU2.388e-4246.8430S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]
RS5_METBF3.119e-4246.5330S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_METTP5.320e-4247.1230S ribosomal protein S5P OS=Methanosaeta thermoph... [more]
RS5_METMA9.074e-4249.2030S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METAC9.074e-4249.2030S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_STAMF2.021e-4146.7330S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_SULAC2.640e-4143.7230S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_METTH5.882e-4146.8130S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METBU7.682e-4144.8330S ribosomal protein S5P OS=Methanococcoides burt... [more]
RS5_METMJ3.812e-4046.0730S ribosomal protein S5P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838720 ID=CF838720; Name=CF838720; organism=Citrus sinensis; type=EST; length=811bp
CTGTTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTCCTAACCCT
AAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCA
TTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACG
TGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAG
TCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAG
CAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACAC
GCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGC
AGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTC
GTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGA
GGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGA
TTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACC
GTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGT
TCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGG
TGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCG
ACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGTGTTTGTTGAA
GACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTTGTGA
AATCTCCATAC
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