CF838720

Overview
NameCF838720
Unique NameCF838720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.226e-38
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W P T+LGRLV  G+I+++ +     LP+KEYQI+D LI   LKDEV+ I   Q+ T +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++RG   W    G+PHT+P  V GK GSV+V + PAP+G G+    V K +L+ AGIDD +  + G TKT  N+  ATF+ L KT
Sbjct:    4 EWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLIPD-LKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKT 193          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.226e-38
Identity = 86/187 (45.99%), Postives = 122/187 (65.24%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   20 WEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 83/191 (43.46%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W P T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + +KDEV+ I   Q+ T +G+R  +   VVVG+ DG++GLG+  SKE A AIR A+I AKL+++ +RRG   W    GR HT+P  V GK GSV + + PAPRG G+    V K +L+ AGI+D +  + G TKT  N+  A +  L +T
Sbjct:    4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILRMAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 85/194 (43.81%), Postives = 120/194 (61.86%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV V+++P PRG G+V   V KK+L+ AGI DV++ + G T+T  NF KA F  L  T
Sbjct:   15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNT 208          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 85/187 (45.45%), Postives = 122/187 (65.24%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T + G T+T  NF +ATF+ L
Sbjct:   16 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTYNFAEATFDAL 201          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.602e-38
Identity = 86/187 (45.99%), Postives = 122/187 (65.24%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   20 WEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.660e-38
Identity = 83/194 (42.78%), Postives = 120/194 (61.86%), Query Frame = 2
Query:  188 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH---KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            +W P TKLGRLV+EG+I  + +I+     IKE +I+D L+     +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AK+++I ++RG   W  +  RPH++P  V GK GSV V+++P PRG G+V   V KK+L  AG+ DV++ + G T+T  NF KA F  L  T
Sbjct:   14 EWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLLPEVNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILTLAGVQDVWSQTLGETRTTVNFAKAVFNALYNT 207          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.660e-38
Identity = 84/187 (44.92%), Postives = 121/187 (64.71%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A V VG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T + G T+T  NF +ATF+ L
Sbjct:   20 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTFNFAEATFDAL 205          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.660e-38
Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 754
            WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VRRG   W    G  H+VP +VTGK GSV V + PAP+G G+V   V KKVL  AGI DV+ ++ G+T+T  NF KAT+  L +T
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNFAKATYNALRET 196          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.086e-38
Identity = 88/205 (42.93%), Postives = 124/205 (60.49%), Query Frame = 2
Query:  191 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFV 799
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I V RG   W    GRPHTV  +  GK GSV V + PAPRG G+      +KVL+ AGI+D++T S G+T+T  NF KATF  L  T     P+   E R V
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALRTEGKAGSVEVELQPAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTVNFAKATFNALQNTAEARVPERTFEKREV 210          
The following BLAST results are available for this feature:
BLAST of CF838720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
RS5_PICTO1.226e-3845.5530S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_METM61.226e-3845.9930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_THEVO1.602e-3843.4630S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]
RS5_PYRAB1.602e-3843.8130S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_METMP1.602e-3845.4530S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM71.602e-3845.9930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_PYRKO4.660e-3842.7830S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_METM54.660e-3844.9230S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METLZ4.660e-3845.7930S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_HALMA6.086e-3842.9330S ribosomal protein S5P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838720 ID=CF838720; Name=CF838720; organism=Citrus sinensis; type=EST; length=811bp
CTGTTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTCCTAACCCT
AAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCA
TTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACG
TGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAG
TCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAG
CAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACAC
GCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGC
AGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTC
GTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGA
GGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGA
TTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACC
GTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGT
TCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGG
TGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCG
ACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGTGTTTGTTGAA
GACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTTGTGA
AATCTCCATAC
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