CF838720

Overview
NameCF838720
Unique NameCF838720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_LACPL (30S ribosomal protein S5 OS=Lactobacillus plantarum GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 59/148 (39.86%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  317 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL--LKT 754
            L D V+ I  + K  + G+R RF A V+VGD  GHVG G   ++EV  AIR A   AK ++I V        +G   T+P +  G  G   + + PA  G+G+ A    + V++ AG+DDV TS R  + T  N V+ATFE L  LKT
Sbjct:   11 LDDNVVAINRITKVVKGGRRLRFAALVIVGDHKGHVGFGTGKAQEVPEAIRKASEAAKKNLITV------PMVGT--TIPHEALGVYGGGRIMLKPAVEGSGVAAGGAVRAVMELAGVDDV-TSKRLGSNTPVNVVRATFEGLKSLKT 149          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_LACBA (30S ribosomal protein S5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  314 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            +L+D V+ I  + K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  A+ ++I V        +G   T+P +V G  G   + + PA  G+G+ A    + V++ AG+ DV TS R  + T  N V+ATF+ L
Sbjct:   11 ELEDNVVAINRITKVVKGGRRLRFAALVIVGDKNGHVGFGTGKAQEVPEAIRKAVEAARKNLIEV------PIVGT--TIPHEVLGTFGGGKIMLKPAAEGSGVTAGGAVRSVMELAGVADV-TSKRLGSNTPVNAVRATFDGL 145          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  314 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            +L+D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G   + M PA  G+G+ A    + VL+ AG+ D+ + S GS   + N V+AT E L
Sbjct:   10 ELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEV------PMVG--STIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPI-NVVRATVEGL 144          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_LEUMM (30S ribosomal protein S5 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  314 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            +L++ V+ I  V K  + G+R RF A VVVGD  GHVG G   ++EV  AIR AI  AK  +I V             T+P  V G+ G   + + PA  G+G+ A    + V++ AGI DV   S GS   + N ++ATF+ L
Sbjct:   12 ELEENVVAINRVTKVVKGGRRLRFAALVVVGDKQGHVGFGTGKAQEVPEAIRKAIEDAKRKLITVPT--------VSTTIPHDVLGEWGGGKILVKPAEEGSGVAAGGAARSVMELAGIADVTAKSLGSATPI-NVIRATFDAL 146          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  314 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATVDGL 144          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 45/145 (31.03%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  311 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            ++ +++++KI  V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P ++ GK G+ T+ M PA  G G++A    +++L+  G+ D+ T  +GS +   N  +AT E L
Sbjct:    7 NQYQEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDILTKIKGS-RNKHNVARATVEAL 142          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  314 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKAT 733
            +L+++V+ I  V K  + G+R RF A VVVGD +GHVG G+  ++EV  AIR A+  AK ++I V             T+P ++ G+ G+  V + PA  G G++A    + VL+ AGI DV + S GS+  + N V+AT
Sbjct:   10 ELEEKVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGMGKAQEVPEAIRKAVEDAKKNLIEVPI--------VNTTIPHQIVGRFGAGRVFLKPASEGTGVIAGGPVRAVLELAGIGDVLSKSLGSSNPI-NMVRAT 140          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_ANATD (30S ribosomal protein S5 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  308 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            G  LK+ V+ I  V K  + G+R +F A VVVGD +GHVG G   + E+  AIR AI  AK  +I V        +G   T+P +  G  G+  V + PAP G G++A    + V + AGI D+ T S GS     N V AT E L
Sbjct:   10 GLDLKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNP-ANVVHATIEAL 146          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_OENOB (30S ribosomal protein S5 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 56/143 (39.16%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  317 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 745
            L++ V+ I  V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK  +I V        +G   T+P +V G  G   V + PA  G+G+ A    + +++ AGI DV   S GS+ T  N V+ATF+ L
Sbjct:   13 LEENVVSINRVTKVVKGGRRLRFSALVIVGDRNGHVGFGTGKAQEVPEAIRKAVEDAKRHLIKV------PTVGT--TIPHQVLGVDGGGKVLLKPASEGSGVAAGGSTRPIMELAGIPDVTAKSLGSS-TAVNVVRATFDGL 146          
BLAST of CF838720 vs. ExPASy Swiss-Prot
Match: RS5_OCEIH (30S ribosomal protein S5 OS=Oceanobacillus iheyensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  317 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL--LKT 754
            L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AI+ A+  AK ++I V        +G   T+P ++ G+ GS  V M PA  G G+++    + +L+ AG+ D+ T S GS   + N ++AT   L  LKT
Sbjct:   12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKNLISV------PIVGT--TIPHEIHGQFGSGNVLMKPAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPI-NMIRATLNGLTNLKT 150          
The following BLAST results are available for this feature:
BLAST of CF838720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
RS5_LACPL2.939e-1639.8630S ribosomal protein S5 OS=Lactobacillus plantaru... [more]
RS5_LACBA2.939e-1637.5030S ribosomal protein S5 OS=Lactobacillus brevis (... [more]
RS5_ENTFA2.939e-1639.5830S ribosomal protein S5 OS=Enterococcus faecalis ... [more]
RS5_LEUMM3.839e-1638.1930S ribosomal protein S5 OS=Leuconostoc mesenteroi... [more]
RS5_GEOSW3.839e-1638.1930S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_FUSNN3.839e-1631.0330S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_BACSK3.839e-1638.5730S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_ANATD3.839e-1639.7330S ribosomal protein S5 OS=Anaerocellum thermophi... [more]
RS5_OENOB5.014e-1639.1630S ribosomal protein S5 OS=Oenococcus oeni (strai... [more]
RS5_OCEIH5.014e-1637.1630S ribosomal protein S5 OS=Oceanobacillus iheyens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838720 ID=CF838720; Name=CF838720; organism=Citrus sinensis; type=EST; length=811bp
CTGTTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTCCTAACCCT
AAACCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCA
TTCGGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACG
TGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAG
TCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAG
CAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACAC
GCTTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGC
AGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTC
GTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGA
GGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGA
TTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACC
GTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGT
TCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGG
TGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCG
ACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGTGTTTGTTGAA
GACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTTGTGA
AATCTCCATAC
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