CF838722

Overview
NameCF838722
Unique NameCF838722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.631e-20
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            G LCLDILQN+WSP Y VAAILTSIQSLL DPN +SPAN EA+ ++ +N++EY +RVRE VE+SW
Sbjct:   85 GELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.437e-20
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            G LCLDILQN+WSP Y VAAILTSIQSLL DPN +SPAN EA+ ++ +N++EY +RVRE VE+SW
Sbjct:   85 GELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            G LCLDILQN+WSP Y VAA+LTSIQSLL DPN  S AN EA+ ++ +N++EY++RVRE VE+SW
Sbjct:   85 GELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 203
            G LCLDILQN+WSP Y VAAILTS+QSLL DPN +SPAN EA+ ++ +++++Y +RVR+ VE SWT
Sbjct:   85 GELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            +G +CLDILQN+W+P Y VA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +RV+E VE+SW  D
Sbjct:   84 NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            +G +CLDILQN+W+P Y VA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +RV+E VE+SW  D
Sbjct:   84 NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWEDD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.909e-19
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            +G +CLDILQN+W+P Y VA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +RV+E VE+SW  D
Sbjct:   84 NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            G LCLDILQN+WSP Y V++ILTSIQSLL DPN +SPAN EAA ++ +++ +Y +RVRE VE SW  D
Sbjct:   85 GELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNED 152          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 200
            +G +CLDILQN+W+P Y VA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +RV+E VE+SW
Sbjct:   84 NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 209
            G LCLDILQN+WSP Y V++ILTS+QSLL DPN +SPAN EAA ++ +++  Y +RVRE VE SW  D
Sbjct:   85 GELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSWNDD 152          
The following BLAST results are available for this feature:
BLAST of CF838722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UBC2_ASPFU2.631e-2069.23Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_EMENI3.437e-2069.23Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_NEUCR1.706e-1966.15Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_YARLI2.228e-1963.64Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_YEAST2.909e-1962.32Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA2.909e-1962.32Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_ASHGO2.909e-1962.32Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_DEBHA6.481e-1963.24Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_CANGA6.481e-1963.64Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_CANAL4.201e-1861.76Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838722 ID=CF838722; Name=CF838722; organism=Citrus sinensis; type=EST; length=487bp
CGGATGGAAGCCTTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATT
TACCATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCC
AAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGA
ACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGG
ACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGT
CCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGGTGTG
AACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATGGTTG
GCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATTGAACTCCACTCAGA
TTGTGTACATGTTATTTACTTGAGCTTGGGTCTTGATGGGACCAATATGA
AGAAGCTTGCAGGCTGTGTGCAAAAAAAAAAAAAAAA
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