CF838722

Overview
NameCF838722
Unique NameCF838722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
The following BLAST results are available for this feature:
BLAST of CF838722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UB2D1_MOUSE1.546e-1251.67Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.546e-1251.67Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.546e-1251.67Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UB2D2_XENLA2.019e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.019e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE2.019e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN2.019e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN2.019e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT2.638e-1250.00Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.638e-1250.00Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838722 ID=CF838722; Name=CF838722; organism=Citrus sinensis; type=EST; length=487bp
CGGATGGAAGCCTTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATT
TACCATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCC
AAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGA
ACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGG
ACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGT
CCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGGTGTG
AACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATGGTTG
GCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATTGAACTCCACTCAGA
TTGTGTACATGTTATTTACTTGAGCTTGGGTCTTGATGGGACCAATATGA
AGAAGCTTGCAGGCTGTGTGCAAAAAAAAAAAAAAAA
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