CF838722

Overview
NameCF838722
Unique NameCF838722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YN   RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:    3 DGSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 182
            +GS+CLDIL++QWSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:   81 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of CF838722 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 28/67 (41.79%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    6 GSLCLDILQNQWSPIYHVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 206
            G++CLDIL++QWSP+Y + + L S+QSLLC P P++P +++ A+++ +N +++ R  RE     WT+
Sbjct:   86 GAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTARE-----WTS 147          
The following BLAST results are available for this feature:
BLAST of CF838722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UBCD1_DROME5.876e-1250.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CAEEL5.876e-1250.00Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_RAT5.876e-1251.67Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB5.876e-1251.67Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE5.876e-1251.67Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA5.876e-1251.67Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN5.876e-1251.67Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG5.876e-1251.67Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D4_HUMAN7.674e-1251.67Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC1_SCHPO2.916e-1141.79Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838722 ID=CF838722; Name=CF838722; organism=Citrus sinensis; type=EST; length=487bp
CGGATGGAAGCCTTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATT
TACCATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCC
AAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGA
ACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGG
ACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGT
CCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGGTGTG
AACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATGGTTG
GCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATTGAACTCCACTCAGA
TTGTGTACATGTTATTTACTTGAGCTTGGGTCTTGATGGGACCAATATGA
AGAAGCTTGCAGGCTGTGTGCAAAAAAAAAAAAAAAA
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