CF838758

Overview
NameCF838758
Unique NameCF838758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 62/193 (32.12%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            RA ++EF+AT +F++ +  +V G+ K      T+G +  +A A    +   V  +   SGGH+NPAVT G+ + R++S  RA  Y   Q LGA+    ++          RLA G        + H   +   L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPA
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLL----------RLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPA 207          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 63/198 (31.82%), Postives = 91/198 (45.96%), Query Frame = 3
Query:  246 IAEFIATFLFLY------ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGY----TKGDGLGA----EIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            IAEFI TF  +       +    +      NT    +G  G+A AFG  +F   Y    ISGGH NPAV+ GL++ ++   ++   Y+  Q LGAI  +  +      G    L G   +  +G+     +G G  A    E + TF+ +  +   TD    A        AP  IG A+ L+HL +IPIT T +NPA
Sbjct:    5 IAEFIGTFWLVLGGCGSAVFAAFIAAPGGGNTNEFGLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPA 196          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV-------------KGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G  G+A AFG  +  + Y    ISG H+NPAV++GL++  +   ++ L Y+V Q LG +   GV+              GF   G YG  + G      GY+    L +E++ T + +  +  AT +KR+ +       AP+ IG  + L+HL +IP+T T +NPA
Sbjct:   33 IGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNG-YGEHSPG------GYSLQAALVSEVVLTGMFLLIILGAT-SKRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 47/162 (29.01%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G+ G++ AFG  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  E++ T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPA
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPA 187          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.844e-15
Identity = 61/188 (32.45%), Postives = 90/188 (47.87%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV-GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            RA +AE + TFLF++  V + M   K      T+ G+  +A A   ++ V+V     +SGGHINPAVTLGL     ++L R+  Y   Q LG+     ++    G    G  A   +  A G      +  E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPA
Sbjct:   19 RAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTG----GEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPA 198          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.844e-15
Identity = 66/189 (34.92%), Postives = 99/189 (52.38%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +A I EFI TFLF++  V + M    S    + VG+  +A A   ++ V++  +AG ISGGH+NPAVTLGL L   +S+ RA  Y + Q L +         F+ +   G +    + +A G +   G+  EII TF L++TV++   D K+ + D   P+L     GF V    LA    +G  +NPA
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMAT-DSLVGNTLVGLFAVAVAHAFVVAVMI--SAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAAC-----FLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPA 195          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.145e-15
Identity = 58/196 (29.59%), Postives = 90/196 (45.92%), Query Frame = 3
Query:  249 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAIC-------------GAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            AE I TF   +    +   V+ +      +G+ G++ AFG  +  + Y    ISG H+NPAVT+GL    +    + L Y++ Q  GAI              G  V KGF   G      G  +++A   T       E++ T + ++ +  AT  +  A        APL IG A+ ++HL +IP+T T +NPA
Sbjct:    8 AEAIGTFWLTFAGCGSA--VIAAGFPQVGIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQYSMMACFLT-------EVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPA 188          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 67/221 (30.32%), Postives = 103/221 (46.61%), Query Frame = 3
Query:  162 DGKDYVEPPPAP----LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY----GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            D +D  + P AP    +   G   S++F +  +AEF+ATF  ++      +G +    K   V   G+A A+G  +  +VY    +SG H+NPAVTLG  +A +    RA  Y + Q   A   A VV   M  G++      L GGA+           L  E + TF L++ + + ATD      D  V  +A + +G  + L  L   P++G  +NPA
Sbjct:   28 DKEDDHQNPQAPDGGDVVVCGMPMSFTFLQMLLAEFLATFFLMFAG----LGAITVEEKKGAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQ-TAAATAASVVLRLMFGGRHAPVPATLPGGAH--------AQSLVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPA 229          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAH--------GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G+ G++ AFG  +  + +    ISG H+NPAVT+GL+   +      + Y++ Q +G +   GV+   + +GQ G  A  +   ++        GY+    L  EI+   + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPA
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLY-TIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPA 187          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFV--LVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G+ G++ AFG  +  + +    ISG H+NPAV+ GL+   +   +  L Y++ Q  G I GAGV+   + +GQ G  +  A   ++G+ +    G  +I   +  +V T+F       S  +      AP+ IG  + L+HL +IPI+ T +NPA
Sbjct:   34 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLY-LIASGQEG-FSLAAGFASNGFGEHSPGGYSMISVMICEIVMTLFFLLVILGSTDERAPKGFAPIAIGLCLTLIHLISIPISNTSVNPA 187          
The following BLAST results are available for this feature:
BLAST of CF838758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
TIP32_ORYSJ4.852e-1632.12Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQPZ_SYNY34.852e-1631.82Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_PSEAE8.276e-1632.34Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
AQPZ_VIBVU1.412e-1529.01Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP43_ORYSJ1.844e-1532.45Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH1.844e-1534.92Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
AQPZ_BRAJA3.145e-1529.59Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
NIP14_ORYSJ4.108e-1530.32Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQPZ_VIBVY4.108e-1529.01Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
AQPZ_SHEON5.365e-1531.41Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838758 ID=CF838758; Name=CF838758; organism=Citrus sinensis; type=EST; length=797bp
CACAACATCAACCGGTCACAAACAAAAAAGCAAGTGCTTCTTATTGACTA
TTCCGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGT
TAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGG
CTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTC
TTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGC
CGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGA
TGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGG
ATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGC
TGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCT
TGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAG
TGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGC
CGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCT
ACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTT
GTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTC
TCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTGG
TTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCG
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