CF838758

Overview
NameCF838758
Unique NameCF838758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 54/185 (29.19%), Postives = 85/185 (45.95%), Query Frame = 3
Query:  246 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGA-NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            I E + + LF++I  L+V+            G+   A A G  + +++     ISGGH NPAV+L + +   L     + Y + Q  G + GA + K      ++   +G A  +V       + LG EII T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPA
Sbjct:   39 IVELVGSALFIFIGCLSVI------ENSPNTGLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGIEIILTMLLVLAV-----CMGAVNEKTMGPLAPFSIGFSVIVDILAGGSISGACMNPA 212          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 3
Query:  210 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVK-SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            GE+      RA +AE + TF+F++  V   M  GV + +        + G+A A      VLV     +SGGH+NPAVT+ L     ++  R+  Y+  Q L +     +++   G      +A   + +  G     GL  EII TF L++ V++     RS+    VP   PL  G  V    +A    +G  +NPA
Sbjct:   11 GEVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGG-----MATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSS----VPGFGPLLTGLIVGANTIAGGNFSGASMNPA 200          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  222 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 533
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 61/209 (29.19%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  174 YVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVY-TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            Y E   A +F P  LK        I+E +ATFL ++++        +   + S +G   +    G ++ V++Y T  ISG H+NPAVTL     R     +  FY   Q  GA+C A V++  +   +   L        H +     L  EI+ TF +++ T   ATD++       V  LA L +G AV +  +   P++G  +NPA
Sbjct:   37 YPEKSFADIFPPNLLKKV------ISEVVATFLLVFVTCGAASIYGEDMKRISQLGQSVVG---GLIVTVMIYATGHISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVLYPIEV--LGTTTPTGPHWH----ALVIEIVVTFNMMFVTCAVATDSRA------VGELAGLAVGSAVCITSIFAGPVSGGSMNPA 224          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 54/196 (27.55%), Postives = 88/196 (44.90%), Query Frame = 3
Query:  216 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK-GFMGAGQYGRLAGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            L S SF +  I EF+ TF  ++        +V + T    V + GIA  +G ++ V++Y    +SG H NPAV++    ++K    +   Y+  Q LG+   A V++  F        L G   V  +   +       E I TF L++ + +    KR+         A + IG  + L  L + PI+G  +NPA
Sbjct:   36 LVSVSFVQKLIGEFVGTFTMIFAGC---SAIVVNETYGKPVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATDKRATGS-----FAGIAIGATIVLDILFSGPISGASMNPA 223          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 55/200 (27.50%), Postives = 89/200 (44.50%), Query Frame = 3
Query:  246 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF---------------MGAGQYGRLAGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            I EF+ T L ++  V  V  +  +    ++ G+  I+  +G  + + VY TAG+SG H+NPAVT+ L+        + + Y++ Q LGA   A +V                   G  +   LAG  +   H   + G     E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPA
Sbjct:   10 IGEFLGTALLIFFGVGCVAALKVAG---ASFGLWEISIMWGMGVALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRGP---LAPLLIGILIAVIGGAMGPLTGFAMNPA 203          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  222 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV 533
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQAMPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of CF838758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
AQP8_MOUSE3.598e-1129.19Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
TIP41_ORYSJ4.700e-1129.15Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
AQP2_TALEU4.700e-1139.42Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
NIP22_ORYSJ6.138e-1129.19Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP31_ARATH8.016e-1127.55Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
GLPF_HAEIN8.016e-1127.50Glycerol uptake facilitator protein OS=Haemophilus... [more]
AQP2_HORSE8.016e-1138.46Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838758 ID=CF838758; Name=CF838758; organism=Citrus sinensis; type=EST; length=797bp
CACAACATCAACCGGTCACAAACAAAAAAGCAAGTGCTTCTTATTGACTA
TTCCGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGT
TAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGG
CTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTC
TTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGC
CGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGA
TGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGG
ATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGC
TGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCT
TGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAG
TGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGC
CGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCT
ACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTT
GTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTC
TCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTGG
TTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCG
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