CF838758

Overview
NameCF838758
Unique NameCF838758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.187e-84
Identity = 155/216 (71.76%), Postives = 172/216 (79.63%), Query Frame = 3
Query:  168 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMG------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +DY +PPPAP F+  EL+ W  YRA IAEF+AT LFLY+S+LTV+G             C  VGI GIAWAFGGMIFVLVYCTAGISGGHINPAVT+GLFLARK+SL R + Y+V QCLGAICG G VK F  +  Y R  GGAN +A GY KG GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   16 RDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSS-YYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 230          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.274e-84
Identity = 156/225 (69.33%), Postives = 180/225 (80.00%), Query Frame = 3
Query:  144 TAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK-------CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            T  ++  GKDY++PPP   FE  ELK WSFYRA IAEFIAT LFLY++VLTV+G  KS T        C++VG+ GI+WAFGGMIF+LVYCTAGISGGHINPAVT GLFLA K+SL RA+ YMV QCLGA CG G+VK F     Y R  GGAN+++ GY  G G+GAEIIGTFVLVYTVFSATD KR+ARDSH+P+LAPLPIGF+VF+VHLATIPITGTGINPA
Sbjct:    7 TEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGF-KSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQST-YYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPA 229          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.211e-83
Identity = 156/216 (72.22%), Postives = 174/216 (80.56%), Query Frame = 3
Query:  168 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +DY +PPP P F+  EL  WS YRA IAEF+AT LFLY++VLTV+G  ++S+TK     C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ YMV QCLGAICG G VK F  +  Y    GGAN +A GY  G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   14 RDYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSS-HYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 228          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.066e-83
Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 3
Query:  168 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMG--------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +DY++PPPAPL +  EL  WS YRA IAEF+AT LFLY++V TV+G        V  ++  C  VG+ GIAWAFGGMIF+LVYCTAG+SGGHINPAVTLGLFLARK+SL RAL YM  QCLGAICG  +VKGF  +  Y R  GGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   16 RDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSS-LYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 232          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.524e-83
Identity = 160/232 (68.97%), Postives = 180/232 (77.59%), Query Frame = 3
Query:  138 IGTAAQTQDG----KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--------SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            I  AA  + G    KDY +PPPAPL +  EL  WS YRA IAEF+AT LFLYI+V TV+G           ++  CS VGI GIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARK+SL RA+ Y+V Q LGAICG G+VKGF  A  Y R  GGAN ++ GY+KG GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:    5 IEAAAAAEGGEYMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAF-YVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 235          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 6.011e-83
Identity = 155/218 (71.10%), Postives = 177/218 (81.19%), Query Frame = 3
Query:  165 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNT-------KCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            GKDY +PPP PLF+  EL  WSFYRA IAEFIAT LFLY++++TV+G  KS T       +C+ VG+ GIAWAFGGMIF+LVYCTAGISGGHINPAVT GL LARK++L RA+ YMV QCLGAICG  +VK F  A  + R  GGAN ++ GY+ G G+ AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   14 GKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGY-KSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSA-YFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPA 229          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.339e-82
Identity = 156/218 (71.56%), Postives = 172/218 (78.90%), Query Frame = 3
Query:  168 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +DY +PPPAPL +  EL  WS YRA IAEF+AT LFLYI+V TV+G            +  CS VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RAL YM  Q LGAICG  +VKGF  +G Y R  GGAN V+ GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   18 RDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQ-SGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPA 234          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.983e-82
Identity = 154/230 (66.96%), Postives = 178/230 (77.39%), Query Frame = 3
Query:  138 IGTAAQTQDG--KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G  A  + G  +DY +PPPAPL +  EL  WS YRA IAEF+AT LFLY++V TV+G            +  C  VG+ GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ Y+V QCLGA+CG  +VKGF  +  Y R  GGAN +A GY+KG GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPA
Sbjct:    1 MGKEADVEAGGVRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSF-YDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPA 229          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.117e-76
Identity = 139/210 (66.19%), Postives = 164/210 (78.10%), Query Frame = 3
Query:  168 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            KDY +PPPAPL + GEL  WS YRA IAEF AT L + ISV TV+G  + + +    G+ GIAWAFGG+IFVLVYCTAGISGGH+NPAVT  + LAR++SL RA  Y + QC+GA+CGAG+ +   G GQY R  GGAN +A GY+ G G+ AE++GTFVLVYTVFSATD KR ARDSHVP+LAPLPIG AV +VHLATIPITGTGINPA
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPA 220          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.586e-75
Identity = 139/211 (65.88%), Postives = 161/211 (76.30%), Query Frame = 3
Query:  174 YVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK---CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            Y +PPPAPL +  EL  WS YRA IAEF+AT +FLY+S+ TV+G          C+ VG  G+AW+FG  IFVLVYCT G+SGGHINPAVTLGLF  RKLSL R + Y+V QCLGAI GAG+VKG M    Y  L GGAN V+ GY+    LGAEI+GTF+LVYTVFSATD KR+ARDS +P+L PLPIGFAVF+VHLATIPITGTGINPA
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKR-PYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPA 232          
The following BLAST results are available for this feature:
BLAST of CF838758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PIP24_ARATH3.187e-8471.76Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP26_ARATH9.274e-8469.33Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH1.211e-8372.22Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_ORYSJ2.066e-8370.64Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ3.524e-8368.97Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP25_ARATH6.011e-8371.10Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP26_MAIZE1.339e-8271.56Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ2.983e-8266.96Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ORYSJ7.117e-7666.19Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ1.586e-7565.88Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838758 ID=CF838758; Name=CF838758; organism=Citrus sinensis; type=EST; length=797bp
CACAACATCAACCGGTCACAAACAAAAAAGCAAGTGCTTCTTATTGACTA
TTCCGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGT
TAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGG
CTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTC
TTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGC
CGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGA
TGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGG
ATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGC
TGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCT
TGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAG
TGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGC
CGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCT
ACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTT
GTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTC
TCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTGG
TTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCG
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