CF838758

Overview
NameCF838758
Unique NameCF838758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 66/194 (34.02%), Postives = 105/194 (54.12%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y++ Q LG+I  + ++               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I+AP+ IGF V    L     TG  +NPA
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLV----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPA 200          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 3
Query:  210 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A  SGGH+NPAVT GL +   +++   LFY V Q LGA     +++ F+  G+    A   + V+ G T+ +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPA
Sbjct:   10 GDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTHGK----AIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPA 199          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 69/200 (34.50%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  207 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            PGEL      +A +AEFI+T +F++    + M   K       +  G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +AL Y V Q LG++    ++K   G    G  +  A V A      + +  E++ TF LVYTV+ +A D K+      + ++AP+ IGF V    LA     G  +NPA
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAM-----NAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPA 201          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.590e-19
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  213 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +    + G     EI  T   V  +F+  D +R+ +   V     L +GF++ L HL  +  TG G+NPA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 3
Query:  213 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +  G +       EI  T   V  +F+  D +R+ R   V     L +GF++ L HL  +  TG G+NPA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG------ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G  G+A AFG  +  + Y   GISGGH NPAV+L L +A +L     + Y V Q LGAI  A ++   + +G+ G  AGG        +   GY+   GL  EII T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NPA
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILY-VIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.364e-18
Identity = 69/200 (34.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  207 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            PGEL      +A +AEFI+  +F++    + M   K      T   G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +A+ Y V Q LG++    ++K   G    G  +  A V A      + +  EI+ TF LVYTV+ +A D K+      + ++AP+ IGF V    LA     G  +NPA
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGA-----WNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPA 201          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.364e-18
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 3
Query:  336 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVV-----------KGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            +G+ G+++AFG  +  + Y   GISGGH NPAV+LGL +A ++     + Y++ Q  GAI  A V+            G   A  YG  + G      GY+    L  E++ TF  +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NPA
Sbjct:   34 IGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPG------GYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 66/193 (34.20%), Postives = 97/193 (50.26%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAG----VVKGFMGAGQYGRLAGG-ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPA 797
            R  I+EF+ TF  ++    +   V  +      +G  G+A+AFG  +  + Y   GISGGH NPAV++GL +A K      + Y+V Q LGA+  A     ++ G  GA   G  A G       GY+    L  EII T   +  +  +T  +       VP+  AP+ IG A+ L+HL +IP+T T +NPA
Sbjct:    3 RKFISEFLGTFWLVFGGCGSA--VFAAAFPELGIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPA 186          
BLAST of CF838758 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.327e-18
Identity = 69/195 (35.38%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  237 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG------AEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 797
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    + V V     ISGGH+NPAVT G  +  ++SL RA+ Y V Q LGA+    ++          RLA G  +   G+    G+G       E + TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPA
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLL----------RLATG-GMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPA 205          
The following BLAST results are available for this feature:
BLAST of CF838758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
TIP1_MEDTR1.611e-1934.02Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP22_MAIZE2.749e-1936.18Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP12_MAIZE2.749e-1934.50Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_HUMAN3.590e-1933.33Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO4.689e-1933.85Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ_BRUSU4.689e-1936.88Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
TIP12_ORYSJ1.364e-1834.50Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQPZ2_RHIME1.364e-1833.33Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
AQPZ1_AGRT51.782e-1834.20Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
TIP31_MAIZE2.327e-1835.38Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838758 ID=CF838758; Name=CF838758; organism=Citrus sinensis; type=EST; length=797bp
CACAACATCAACCGGTCACAAACAAAAAAGCAAGTGCTTCTTATTGACTA
TTCCGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGT
TAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGG
CTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTC
TTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGC
CGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGA
TGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGG
ATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGC
TGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCT
TGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAG
TGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGC
CGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCT
ACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTT
GTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTC
TCATGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTGG
TTCACTTGGCCACTATCCCAATTACCGGAACTGGCATCAACCCAGCG
back to top