CF838760

Overview
NameCF838760
Unique NameCF838760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 63/261 (24.14%), Postives = 113/261 (43.30%), Query Frame = 3
Query:   42 ANNINKSQKIFHFILLRSQ-------EMVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL---SKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAV------------GVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKK 752
            A +    QK  H ILL          ++  +    + + + ++D VD+        + R    +T++RFL ARD +VS+A  ML D L WR ++ +D +L   ++P V  E +         G   + ++G P++ +             +G+    + ++H   +   +INE  +R+          +P+     ++D+ GL +  L +  IK L  I    + NYPE      +V  P +F   W +V   + E TR K
Sbjct:  188 AKSPTPEQKQHHDILLDGDFIARNLGQLSPMQESKLLELRKMLDGVDD--------LERVPSYQTILRFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLEEYTEPAVVVEHFPG-------GWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLRLALHICEEGIQKINESAERL---------DKPVLNWSLLVDLEGLSMRHLWRPGIKALLYIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSK 424          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: YKJ1_YEAST (CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae GN=YKL091C PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 68/251 (27.09%), Postives = 120/251 (47.81%), Query Frame = 3
Query:  120 EAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGY--------SREGLPVFAV---GVGLS-----TFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLN---YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            EA+ QF++++ +         +N        TL+RFL+AR  +++ + +M ++   WR +   + I+       E  +   D + I +A           ++G P++     G+ L      T +K  +   V+ +     YR    +P+ S + G  I T   VLD+ G+ LS  +   +L+ I  V D++   YPE+   +YI++ P+ FS  +K+VKP L   T  KI +L  S + ELLK +  E+L
Sbjct:   31 EALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENL 262          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_CANGA (SEC14 cytosolic factor OS=Candida glabrata GN=SEC14 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 59/208 (28.37%), Postives = 97/208 (46.63%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS------KPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            TL+RFL+AR  +V+ A +M  +C  WR +   + I+       KP+V     +    +   G   Y  E   V    +   T  +  +   V  +  +  YR    LP+ S   G  + T   V+D+ G+ +S A S +  +   S +    YPE+   +Y++N P+ FS  +++ KP L   T  KI +L  S + ELLK +  E+L
Sbjct:   55 TLLRFLRARKFDVALAKEMFENCEKWRKEYGTNTIMQDFHYDEKPLVAKYYPQYYHKTDKDGRPVYFEELGAVNLTEMEKITTQERMLKNLVWEYESVVNYR----LPACSRAAGYLVETSCTVMDLKGISISSAYSVLSYVREASYISQNYYPERMGKFYLINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQSELLKQIPAENL 258          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L2_BOVIN (SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSA---SAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            L+R+L+AR+ N+ K+  ML   + +R Q +ID I+S    P E+ +        GM GY  EG P++   +G        +    Q   +       ++L      + K G+ I     + D  GL L  L +  ++       + + NYPE     +IV  P +F   + +VKP L E TRKKIQVL  + ++ LLK +  + L
Sbjct:   38 LLRWLRARNFNLQKSEAMLRKHVEFRKQKDIDNIMSWQ--PPEVVQQYLSG---GMCGYDLEGSPIWYDIIGPLDAKGLLLSASKQDLFKTKMRDCELLLQECVRQTEKMGKKIEATTLIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFIVKAPKLFPVAYNLVKPFLSEDTRKKIQVLGANWKEVLLKYISPDQL 237          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_KLULA (SEC14 cytosolic factor OS=Kluyveromyces lactis GN=SEC14 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 57/208 (27.40%), Postives = 96/208 (46.15%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS------KPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQI-KLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            TL+RFL+AR  ++  +  M  +C  WR +  +D I        KP+V     +    +   G   Y  E   V    +   T  +  +   V  +     YR    LP+ S K G  + T   +LD+ G+ +S+ +Q+   +   S +    YPE+   +Y++N P+ FS  +++ KP L   T  KI +L  S + +LLK +  E+L
Sbjct:   55 TLLRFLRARKFDLEASKIMYENCEKWRKEFGVDTIFEDFHYEEKPLVAKYYPQYYHKTDNDGRPVYIEELGSVNLTQMYKITTQERMLKNLVWEYEAFVRYR----LPACSRKAGYLVETSCTILDLKGISISSAAQVLSYVREASNIGQNYYPERMGKFYLINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKDLLKQIPAENL 258          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 57/197 (28.93%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  210 ETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSK---PIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVG----LSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQG 770
            +TL+RFL+ARD ++ KA  ML + L WR ++ ID IL +   P+V  + +         G   + ++G P++ + +G                ++  + I E     ++  A+   G+PI     ++D+ GL +  L +  +K LL II TV+  NYPE      IV  P +F   W +V   + E TR K     G
Sbjct:  253 QTLLRFLRARDFSIEKAASMLQESLQWREEHRIDDILGEYKTPVVVEKYFPG-------GWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLKLTLHICE-EGLKLMKEATKLFGKPIWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVEK-NYPETMGRVLIVRAPRVFPVLWTIVSAFIDENTRSKFLFFGG 440          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 59/198 (29.80%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  210 ETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQS--------HIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQG 770
            +TL+RFL+ARD ++ KA  ML + L WR +  ID IL +   P  + +        G   + ++G P++ + +G  T D   +   V          HI     R   ++  A+   G+P+     ++D+ GL +  L +  +K LL II TV + NYPE      IV  P +F   W +V   + E TR K     G
Sbjct:  256 QTLLRFLRARDFSIDKATGMLQESLQWRKEQRIDSILGEYKTPAVVEKYFPG----GWHHHDKDGRPLYILRLG--TMDVKGLLKSVGEDELLKLTLHICEEGLR---LMKEATKLFGKPVWNWCLLVDLDGLSMRHLWRPGVKALLRIIETV-ETNYPETMGRVLIVRAPRVFPVLWTIVSTFIDENTRSKFLFFGG 443          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L4_HUMAN (SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 59/210 (28.10%), Postives = 104/210 (49.52%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILS-KPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGL----STFDKASVHCYVQSHIQINEYRDRVILPSA---SAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            L+R+L+AR+ ++ K+  ML   + +R Q ++D I++ +P    +LY    DS   G+ GY  EG PV+   +G          AS    ++  I++ E    ++L      + K GR I   + V DM GL L  L +  +++     ++ + NYPE      ++  P +F   + +VK  + E TR+KI +L  + + EL K +  + L
Sbjct:   38 LLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDNIVTWQPPEVIQLY----DSG--GLCGYDYEGCPVYFNIIGSLDPKGLLLSASKQDMIRKRIKVCE----LLLHECELQTQKLGRKIEMALMVFDMEGLSLKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQL 237          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L2_MOUSE (SEC14-like protein 2 OS=Mus musculus GN=Sec14l2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 58/199 (29.15%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSA----SAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 794
            L+R+L+AR  ++ K+  ML   + +R Q +IDKI+S    P E+ +        G  GY  +G PV+   +G     K  +    +  +   + RD  +L       + K G+ I T   + D  GL L  L +  ++      T+ + NYPE     ++V  P +F   + ++KP L E TR+KI VL  + ++ LLK
Sbjct:   38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQ--PPEVIQQYLSG---GRCGYDLDGCPVWYDIIG-PLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQTTKLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRRKIMVLGANWKEVLLK 230          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L2_HUMAN (SEC14-like protein 2 OS=Homo sapiens GN=SEC14L2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 56/198 (28.28%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSAS---AKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 794
            L+R+L+AR  ++ K+  ML   + +R Q +ID I+S    P E+ +        GM GY  +G PV+   +G             Q  ++       ++L   +    K GR + T   + D  GL L  L +  ++       + + NYPE     ++V  P +F   + ++KP L E TRKKI VL  + ++ LLK
Sbjct:   38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ--PPEVIQQYLSG---GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLK 230          
The following BLAST results are available for this feature:
BLAST of CF838760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RETM_DROPS1.374e-1324.14Protein real-time OS=Drosophila pseudoobscura pseu... [more]
YKJ1_YEAST1.795e-1327.09CRAL-TRIO domain-containing protein YKL091C OS=Sac... [more]
SEC14_CANGA1.795e-1328.37SEC14 cytosolic factor OS=Candida glabrata GN=SEC1... [more]
S14L2_BOVIN2.344e-1329.27SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1... [more]
SEC14_KLULA6.820e-1327.40SEC14 cytosolic factor OS=Kluyveromyces lactis GN=... [more]
RETM_AEDAE6.820e-1328.93Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]
RETM_ANOGA8.907e-1329.80Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
S14L4_HUMAN1.163e-1228.10SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE... [more]
S14L2_MOUSE1.163e-1229.15SEC14-like protein 2 OS=Mus musculus GN=Sec14l2 PE... [more]
S14L2_HUMAN1.984e-1228.28SEC14-like protein 2 OS=Homo sapiens GN=SEC14L2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838760 ID=CF838760; Name=CF838760; organism=Citrus sinensis; type=EST; length=815bp
GTGAATGTTAACTGTAATAGAGTAGAAAAGGGATTTCTTAAGCTAATAAT
ATTAATAAGTCTCAAAAGATTTTCCATTTTATTCTTCTGAGATCACAGGA
AATGGTTACCGTTTCTCATGAAGCTGTCACTCAGTTCCAAGCTCTGATGG
ATCAAGTTGATGAGCCATTGAAGATTACATTTCAGAATATTCATCGAGGA
TATCCAACTGAAACTTTGGTTCGTTTTCTAAAAGCCAGAGATGGGAATGT
TTCCAAAGCTCATAAAATGTTGATGGATTGTTTGCACTGGAGGGCACAGA
ATGAGATTGACAAAATATTATCAAAACCCATAGTACCTACTGAATTGTAC
AGAGCCGTGCGTGATTCACAGCTCATAGGAATGGCAGGTTACTCAAGAGA
GGGTTTGCCAGTCTTTGCTGTTGGTGTAGGGCTCAGTACGTTTGACAAAG
CATCTGTCCACTGCTATGTGCAATCACATATTCAAATAAATGAATATAGG
GATCGTGTCATTTTGCCTTCGGCATCAGCAAAGCATGGGCGACCAATAAC
CACATGTGTGAAGGTTTTAGATATGACTGGTCTGAAGCTTTCAGCATTAA
GCCAGATAAAGTTATTGACAATCATATCGACAGTTGATGACTTGAACTAC
CCAGAGAAGACAAATACATATTATATTGTGAATGTGCCATACATATTTTC
CGCATGTTGGAAGGTCGTTAAGCCCCTTCTGCAGGAGAGGACAAGGAAAA
AGATTCAGGTCTTGCAAGGTTCTGGGCGAGATGAGCTATTGAAGATCATG
GATTTTGAATCACTT
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