CF838760

Overview
NameCF838760
Unique NameCF838760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: SEC14_YARLI (SEC14 cytosolic factor OS=Yarrowia lipolytica GN=SEC14 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 59/206 (28.64%), Postives = 95/206 (46.12%), Query Frame = 3
Query:  213 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGY---SREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVI---------LPSASAKHGRPITTCVKVLDMTGLKLSALSQIK-LLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELL 791
            TL+RFL+AR  +V  A +M  +C  WR +   + IL         Y+  ++   +    Y    ++G PV+   VG     K ++H   +   Q    R+ V          LP+ S   G  I T   +LD+ G+ LS+ SQ+   L   S +    YPE+   +Y++N P+ FS  + V+K  L   T  KI V   + +++LL
Sbjct:   56 TLLRFLRARKFDVPLAQEMWENCEKWRKEFGTNTILED-----FWYKEKKEVAKLYPQYYHKTDKDGRPVYVENVG-----KVNIHEMYKITTQERMLRNLVWEYESFVRHRLPACSRVVGHLIETSCTILDLKGVSLSSASQVYGFLKDASNIGQNYYPERMGKFYLINAPFGFSTVFSVIKRFLDPVTVSKIHVYGSNYKEKLL 251          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 54/206 (26.21%), Postives = 101/206 (49.03%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEY---RDRVILPSASAKHGRP--ITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKK-IQVLQGSGRDELLKIMDFESL 815
            L++FL+ARD  V+ + +ML  CL WR + + +K+  + +   +L     + ++  M GY +EG PV     G+   +K           ++N++   R +V+       H +P  + + ++V D+  +    L ++    I+S   D NYPE   T   +NVP+ FS  + +  P L +RT+ K +   +G+  + L K +  E +
Sbjct:   85 LLKFLRARDFKVADSLRMLEKCLEWREEFKAEKLTEEDLGFKDL-----EGKVAYMRGYDKEGHPVCYNAYGVFK-EKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQVTDLKDMPKREL-RVASNQILSLFQD-NYPELVATKIFINVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDI 282          
BLAST of CF838760 vs. ExPASy Swiss-Prot
Match: S14L3_RAT (SEC14-like protein 3 OS=Rattus norvegicus GN=Sec14l3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 59/206 (28.64%), Postives = 99/206 (48.06%), Query Frame = 3
Query:  216 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMAGYSREGLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRD--RVI--LPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 815
            L+R+L+AR+ ++ K+  ML   + +R   +ID IL     P E+ +        G+ GY R+G PV+   +G     K  +    +  +   + RD  R++      + + GR I T V + D  GL L    +  +++      + + NYPE      IV    +F   + ++KP L E TR+KI VL  S ++ LLK++  E L
Sbjct:   38 LLRWLRARNFDLQKSEAMLRKYMEFRKTMDIDHILDWQ--PPEVIQKYMPG---GLCGYDRDGCPVWYDIIG-PLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGRKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIVVLGNSWKEGLLKLISPEEL 237          
The following BLAST results are available for this feature:
BLAST of CF838760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SEC14_YARLI7.540e-1228.64SEC14 cytosolic factor OS=Yarrowia lipolytica GN=S... [more]
PATL6_ARATH1.286e-1126.21Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
S14L3_RAT6.383e-1128.64SEC14-like protein 3 OS=Rattus norvegicus GN=Sec14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838760 ID=CF838760; Name=CF838760; organism=Citrus sinensis; type=EST; length=815bp
GTGAATGTTAACTGTAATAGAGTAGAAAAGGGATTTCTTAAGCTAATAAT
ATTAATAAGTCTCAAAAGATTTTCCATTTTATTCTTCTGAGATCACAGGA
AATGGTTACCGTTTCTCATGAAGCTGTCACTCAGTTCCAAGCTCTGATGG
ATCAAGTTGATGAGCCATTGAAGATTACATTTCAGAATATTCATCGAGGA
TATCCAACTGAAACTTTGGTTCGTTTTCTAAAAGCCAGAGATGGGAATGT
TTCCAAAGCTCATAAAATGTTGATGGATTGTTTGCACTGGAGGGCACAGA
ATGAGATTGACAAAATATTATCAAAACCCATAGTACCTACTGAATTGTAC
AGAGCCGTGCGTGATTCACAGCTCATAGGAATGGCAGGTTACTCAAGAGA
GGGTTTGCCAGTCTTTGCTGTTGGTGTAGGGCTCAGTACGTTTGACAAAG
CATCTGTCCACTGCTATGTGCAATCACATATTCAAATAAATGAATATAGG
GATCGTGTCATTTTGCCTTCGGCATCAGCAAAGCATGGGCGACCAATAAC
CACATGTGTGAAGGTTTTAGATATGACTGGTCTGAAGCTTTCAGCATTAA
GCCAGATAAAGTTATTGACAATCATATCGACAGTTGATGACTTGAACTAC
CCAGAGAAGACAAATACATATTATATTGTGAATGTGCCATACATATTTTC
CGCATGTTGGAAGGTCGTTAAGCCCCTTCTGCAGGAGAGGACAAGGAAAA
AGATTCAGGTCTTGCAAGGTTCTGGGCGAGATGAGCTATTGAAGATCATG
GATTTTGAATCACTT
back to top