CF838764

Overview
NameCF838764
Unique NameCF838764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838764 vs. ExPASy Swiss-Prot
Match: BGLS_RHIRD (Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  405 GNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTD 788
            G+  I  A   AR++D  +L++G +   + E +D   + LPGRQ+EL+  VA+ +   VV+VL  GGP+++ +     ++ A+L + YPGQ  G A+ADVLFG   P G+LP T +P+       +TD
Sbjct:  529 GDAGIAEAVETARKSDIVLLLVGREGEWDTEGLDLPDMRLPGRQEELIEAVAETNPN-VVVVLQTGGPIEMPWLG---KVRAVLQMWYPGQELGNALADVLFGDVEPAGRLPQT-FPKALTDNSAITD 651          
BLAST of CF838764 vs. ExPASy Swiss-Prot
Match: BGLB_CLOTH (Thermostable beta-glucosidase B OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bglB PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 63/197 (31.98%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  195 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGC----------FGVACNG--NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW 749
            +VLLKN    LPL   +  T+A+IG            Y G    + TP +    Y + I +AG           + +  +G   +LI  A+ AA  +D  V+  GL    E+E  DR  + +P  Q  L+  VA+     +V+VL+ G PV++ +     ++ ++L     GQA G A+ADVLFG  NP GKL  T+
Sbjct:  316 MVLLKNEDDVLPLK--KSGTIALIG-----AFVKKPRYQGSGSSHITPTRLDDIYEE-IKKAGGDKVNLVYSEGYRLENDGIDEELINEAKKAASSSDVAVVFAGLPDEYESEGFDRTHMSIPENQNRLIEAVAEVQSN-IVVVLLNGSPVEMPWID---KVKSVLEAYLGGQALGGALADVLFGEVNPSGKLAETF 500          
BLAST of CF838764 vs. ExPASy Swiss-Prot
Match: BGL1_ASPAC (Beta-glucosidase 1 OS=Aspergillus aculeatus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 64/206 (31.07%), Postives = 90/206 (43.69%), Query Frame = 3
Query:  198 VLLKNSARTLPLSTLRHHTVAVIGPNS----------------DVTVTMIGNYAGVACGY-TTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ-----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW 749
            VLLKN+   LPL T +   VA++G ++                + T+ M          Y  TP Q I   A+ +   G    A   N  +   E  A+QA  +++ +  D      S++    DR  L L      L+   A      +V V+   GPV V    + P + AILW G PGQ  G ++ADVL+GR NPG K P TW
Sbjct:  401 VLLKNN-NALPL-TGKERKVAILGEDAGSNSYGANGCSDRGCDNGTLAMAWGSGTAEFPYLVTPEQAIQ--AEVLKHKGSV-YAITDNWALSQVETLAKQASVSLVFVNSDAGEGYISVDGNEGDRNNLTLWKNGDNLIKAAANNCNNTIV-VIHSVGPVLVDEWYDHPNVTAILWAGLPGQESGNSLADVLYGRVNPGAKSPFTW 600          
BLAST of CF838764 vs. ExPASy Swiss-Prot
Match: BGLS_KLUMA (Beta-glucosidase OS=Kluyveromyces marxianus PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  375 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW 749
            QAG      +  ++  AAE+AA+  D  VL++GL+   E E  DR  + LP R  ELV  V KA+   V+ V   G PV+  + +      A++   Y G   G AIADVL+G   P GKL ++W
Sbjct:  551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVI-VNQSGTPVEFPWLEE---ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW 670          
The following BLAST results are available for this feature:
BLAST of CF838764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
BGLS_RHIRD3.528e-1537.50Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1... [more]
BGLB_CLOTH5.633e-1331.98Thermostable beta-glucosidase B OS=Clostridium the... [more]
BGL1_ASPAC4.769e-1231.07Beta-glucosidase 1 OS=Aspergillus aculeatus PE=2 S... [more]
BGLS_KLUMA5.273e-1137.60Beta-glucosidase OS=Kluyveromyces marxianus PE=3 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838764 ID=CF838764; Name=CF838764; organism=Citrus sinensis; type=EST; length=858bp
CGGAGGGGGCACTACGGGGAGGTTTGCTAAGAGAAGAGGATGTTAACTTA
GCGTTAGCCTACACAATAACGGTTCAAATGAGGCTTGGCATGTTTGATGG
CGAGCCATCGGCCCAACCATTTGGAAACTTGGGTCCAAGAGATGTCTGTA
CTCCAGCCCACCAGCAGCTAGCCCTCCAAGCCGCCCATCAAGGCATTGTT
TTGTTGAAAAACTCTGCAAGAACTTTGCCACTTTCCACTTTAAGGCATCA
CACTGTTGCGGTCATTGGACCCAATTCTGACGTCACCGTGACCATGATCG
GCAACTATGCAGGTGTTGCGTGTGGATACACAACTCCGCTACAAGGGATT
TCAAGATATGCCAAGACGATTCATCAAGCAGGTTGCTTTGGTGTTGCTTG
TAATGGCAACCAATTAATCGGAGCCGCTGAAGTAGCAGCTCGCCAGGCTG
ATGCTACCGTCTTAGTAATGGGACTTGATCAATCGATAGAGGCAGAATTC
ATAGACAGGGCAGGACTGCTTTTGCCTGGACGCCAACAAGAGCTCGTATC
CCGAGTTGCCAAGGCATCAAGAGGCCCTGTTGTGTTGGTCTTGATGTGTG
GCGGCCCTGTTGATGTATCATTTGCTAAGAATGATCCGAGAATCGGTGCC
ATTTTGTGGGTTGGTTATCCTGGGCAGGCTGGTGGTGCCGCCATTGCTGA
CGTTTTGTTCGGAAGAGCTAATCCAGGAGGAAAGCTGCCAATGACTTGGT
ACCCTCAGGATTACGTGTCTAGACTGCCAATGACAGACATGAGAATGCGA
GCAGCAAGAGGCTATCCTGGAAGAACTTACAGATTCTATAAAGGCCCAGT
TGTATTTC
back to top