CF838767

Overview
NameCF838767
Unique NameCF838767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H33_DROHY (Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H33_DANRE (Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H33_CHICK (Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H33_BOVIN (Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CF838767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_DROHY1.734e-5784.56Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 S... [more]
H33_DANRE1.734e-5784.56Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3[more]
H33_CHICK1.734e-5784.56Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2[more]
H33_BOVIN1.734e-5784.56Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3[more]
H3_STRDR2.265e-5784.56Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST2.265e-5784.56Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE2.265e-5784.56Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI2.265e-5784.56Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]
H3_PISOC2.265e-5784.56Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR2.265e-5784.56Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838767 ID=CF838767; Name=CF838767; organism=Citrus sinensis; type=EST; length=641bp
GAAAAAAGAAACCCTTTATTTCCCAAATCAATGGCCCGCACGAAGCAAAC
CGCCCTCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCA
AGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCAC
AGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAA
GAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGG
AAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTT
GCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGA
CACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGG
ACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAAGAACTTTCT
GATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAAT
ATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGATTAGATCGG
GTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAA
TCTAATAGATAATTAGCCTTTTAATAAAAAAAAAAAAAAAA
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