CF838767

Overview
NameCF838767
Unique NameCF838767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.794e-54
Identity = 111/136 (81.62%), Postives = 113/136 (83.09%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQ+A KS GGKAP KQLATKAARKSAP TGGVKKPHRFRPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.794e-54
Identity = 112/136 (82.35%), Postives = 113/136 (83.09%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLATKA    A ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.344e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.061e-54
Identity = 110/135 (81.48%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 435
            MARTKQTA KSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.998e-54
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.906e-54
Identity = 111/136 (81.62%), Postives = 114/136 (83.82%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRK +ATKA RK+AP  GGVKKPHRFRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 8.906e-54
Identity = 107/136 (78.68%), Postives = 116/136 (85.29%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.984e-53
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.984e-53
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CF838767 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.984e-53
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1
Query:   31 MARTKQTALKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 438
            MARTKQTA KSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CF838767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L1_ARATH1.794e-5481.62Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H32_CICIN1.794e-5482.35Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_SCHPO2.344e-5479.41Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_MORAP3.061e-5481.48Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_LODEL3.998e-5479.41Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MASBA8.906e-5481.62Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_CANAL8.906e-5478.68Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO1.984e-5378.68Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H31_PICST1.984e-5378.68Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU1.984e-5378.68Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838767 ID=CF838767; Name=CF838767; organism=Citrus sinensis; type=EST; length=641bp
GAAAAAAGAAACCCTTTATTTCCCAAATCAATGGCCCGCACGAAGCAAAC
CGCCCTCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCA
AGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCAC
AGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAA
GAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGG
AAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTT
GCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGA
CACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGG
ACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAAGAACTTTCT
GATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAAT
ATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGATTAGATCGG
GTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAA
TCTAATAGATAATTAGCCTTTTAATAAAAAAAAAAAAAAAA
back to top