CF838768

Overview
NameCF838768
Unique NameCF838768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 58/240 (24.17%), Postives = 99/240 (41.25%), Query Frame = 1
Query:  226 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV-----KGFMXXXXXXXXXXXXXXVAHGY--------TKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW---------DDHWIFWVGPFIG 879
            S  +  ++EF+ TF+ + +    V   + S  +    G+  I   F   +   +Y   G+SGGHINPAV+  + L  ++   +  FY+  Q LGA  GA  V      G M               AH +        +  +    +++ T +L+  VF+  D++          L P+ IG  + ++  +    +G  +NPAR L    ++    GW         +  WI  VGP +G
Sbjct:   21 SLAKETLSEFLGTFILIVLGCGCVAQAILSRGRFG--GVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRG---LEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPR-LFTALAGWGFEVFRAGNNFWWIPVVGPLVG 254          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 57/212 (26.89%), Postives = 89/212 (41.98%), Query Frame = 1
Query:  247 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            AEF+ TF+ ++ +    +   K     S  G    A   G  +  ++  T  ISG H+NP++T      R     +   Y+ +Q LG+IC    +KG                +    +       E I TF L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG A+       +   WI+ + P +G
Sbjct:   87 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVTTIILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQVLGSICAGFALKGVFHPFLSGGVTVPDPTI----STAQAFFTEFIITFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAVAAG---NYRQLWIYLIAPTLG 282          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 55/213 (25.82%), Postives = 85/213 (39.91%), Query Frame = 1
Query:  244 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 816
            IAEF+ T L ++  V  V  +  +        I  + W  G  +   +Y TAG+SG H+NPAVT  L+L       + + ++V Q  GA C A +V G                  H   +G     ++ GTF                      +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 55/213 (25.82%), Postives = 85/213 (39.91%), Query Frame = 1
Query:  244 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 816
            IAEF+ T L ++  V  V  +  +        I  + W  G  +   +Y TAG+SG H+NPAVT  L+L       + + ++V Q  GA C A +V G                  H   +G     ++ GTF                      +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 55/213 (25.82%), Postives = 85/213 (39.91%), Query Frame = 1
Query:  244 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 816
            IAEF+ T L ++  V  V  +  +        I  + W  G  +   +Y TAG+SG H+NPAVT  L+L       + + ++V Q  GA C A +V G                  H   +G     ++ GTF                      +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 55/213 (25.82%), Postives = 85/213 (39.91%), Query Frame = 1
Query:  244 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTF----------------------VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 816
            IAEF+ T L ++  V  V  +  +        I  + W  G  +   +Y TAG+SG H+NPAVT  L+L       + + ++V Q  GA C A +V G                  H   +G     ++ GTF                      +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +
Sbjct:   12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEIS-VIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ------THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  220 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 531
            S +F RA ++EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT    +   +S  RALFY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 65/230 (28.26%), Postives = 97/230 (42.17%), Query Frame = 1
Query:  247 AEFIATFLFLYI----SVLTVM---GVVKSNTKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD-----HGWDDHWIFWVGPFIG 879
            AE + TF+ ++     +V+T+M   G  K N     +G  G       I  AF   I A++Y    ISG HINPAVT  L+   +      + Y+V Q +GA  G+ +    +                 G   G  +  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+ G    Y  D     + W    I+ +GP +G
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVG 232          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 54/212 (25.47%), Postives = 87/212 (41.04%), Query Frame = 1
Query:  247 AEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            AEF+ TF+ ++ +     G + +        + G A   G  +  ++  T  ISG H+NP++T      R         Y+  Q   +IC +  +KG                     + G     E I TF+L++ V + ATD +       V  LA + +G  V L  L   P TG  +NP R+LG A+       +   W++ V P +G
Sbjct:   82 AEFVGTFILIFTATA---GPIVNQKYDGAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVF------HPFMSGGVTIPSVSLGQAFALEFIITFILLFVVTAVATDTRA------VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAV---ASGNYRSLWVYLVAPTLG 275          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  220 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 531
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of CF838768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AQP9_HUMAN1.898e-1124.17Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
NIP31_ORYSJ2.479e-1126.89Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
GLPF_SHIFL3.237e-1125.82Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_ECOLI3.237e-1125.82Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL63.237e-1125.82Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO573.237e-1125.82Glycerol uptake facilitator protein OS=Escherichia... [more]
AQP2_PROHA5.522e-1139.42Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQPM_ARCFU7.212e-1128.26Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NIP51_ARATH9.419e-1125.47Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
AQP2_TALEU9.419e-1139.42Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838768 ID=CF838768; Name=CF838768; organism=Citrus sinensis; type=EST; length=881bp
GATCAAACAGCTACTTGCAAACGACTCAAATCTTTTGTGTCTTTTAGCTA
ATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGGCAAAGAAGAGGACGTTA
GATTAGGAGCCAATAAGTTCACTGAGAGGCAACCGATTGGAACAGCAGCT
CAGAGCCAAGATGGCAAGGACTACGTTGAGCCGCCGCCGGCACCACTCTT
CGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTACAGGGCCGGTATAGCCG
AGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTATTGACAGTGATG
GGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGGAT
TGCATGGGCCTTCGGTGGCATGATCTTCGCGCTCGTTTACTGCACAGCTG
GCATCTCGGGTGGTCATATCAACCCGGCGGTGACATTCGGGCTGTTCTTG
GCGAGGAAGCTGTCGTTGACACGTGCACTTTTCTACATGGTCATGCAGTG
TCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAAGGGTTTCATGGGTGCCG
GCCAATACGGGCGGCTCGGCGGCGGTGCCAATGCTGTAGCTCATGGCTAC
ACCAAGGGTGATGGTCTTGGTGCTGAGATTATTGGTACTTTTGTTCTTGT
CTACACAGTTTTCTCTGCCACTGATGCCAAACGTAGCGCCAGAGACTCTC
ATGTTCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTT
CACTTGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAG
TCTTGGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATT
GGATTTTCTGGGTGGGACCATTCATTGGAGC
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