CF838768

Overview
NameCF838768
Unique NameCF838768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.678e-90
Identity = 171/255 (67.06%), Postives = 184/255 (72.16%), Query Frame = 1
Query:  139 GTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            G  A     KDY              T WS YRA IAEFIAT LFLYI+V TV+G            +  C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL Y++ QCLGAICG G+VKGF               ++ GY+KG GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD  WDD WIFWVGP IG
Sbjct:    9 GPEAGEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANE-LSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIG 262          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.678e-90
Identity = 171/255 (67.06%), Postives = 184/255 (72.16%), Query Frame = 1
Query:  139 GTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            G  A     KDY              T WS YRA IAEFIAT LFLYI+V TV+G            +  C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL Y++ QCLGAICG G+VKGF               ++ GY+KG GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD  WDD WIFWVGP IG
Sbjct:   10 GPEAGEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANE-LSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIG 263          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.678e-90
Identity = 168/246 (68.29%), Postives = 185/246 (75.20%), Query Frame = 1
Query:  166 KDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMG--------VVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            KDY              T WS YRA IAEFIAT LFLYI+V TV+G        V  ++  CS VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG G+VKGF               ++ GY+KG GLGAEIIGTFVLVYTVFSATD KR+ARDSH+P+LAPLPIGFAVF+VHLATIPITGTGINPARSLG A+IYNKD  WDD WIFWVGP IG
Sbjct:   18 KDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANE-LSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIG 262          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 5.965e-90
Identity = 168/227 (74.01%), Postives = 181/227 (79.74%), Query Frame = 1
Query:  217 TSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            T WS YRA IAEF+AT LFLYI+VLTV+G  ++S+TK     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAICG G VK F               +A GY  G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK   WDDHWIFWVGPFIG
Sbjct:   31 TKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANS-LADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIG 256          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 5.965e-90
Identity = 167/246 (67.89%), Postives = 184/246 (74.80%), Query Frame = 1
Query:  166 KDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--------SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            KDY               SWS YRA IAEFIAT LFLYI+V TV+G           ++  C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL Y+V QCLGAICG G+VK F               +A GY++G GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IYNKD  WDDHWIFWVGP +G
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANS-LASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVG 263          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 7.791e-90
Identity = 164/245 (66.94%), Postives = 181/245 (73.88%), Query Frame = 1
Query:  166 KDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGV-------VKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            KDY              T WS YRA IAEFIAT LFLYI+VLT++G        +  NT+C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YM+ QC GAICGAG+ KGF               V+ GY KG  LGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARS G A+I+N D  WDD WI+WVGPF+G
Sbjct:   17 KDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNT-VSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVG 260          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.329e-89
Identity = 164/248 (66.13%), Postives = 184/248 (74.19%), Query Frame = 1
Query:  166 KDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGV----------VKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            KDY               SWS YRA IAEFIAT LFLY++V TV+G             ++  C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL YMV QCLGA+CG G+VK F               +A GY++G GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++YNKD  WDDHWIFWVGP +G
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANS-LASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLG 265          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.329e-89
Identity = 167/225 (74.22%), Postives = 181/225 (80.44%), Query Frame = 1
Query:  223 WSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            WSFYRA IAEF+AT LFLYI+VLTV+G  ++S+T      C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL Y++ QCLGAICG G VK F               +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK   WDDHWIFWVGPFIG
Sbjct:   35 WSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANS-LADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIG 258          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.267e-89
Identity = 166/227 (73.13%), Postives = 181/227 (79.74%), Query Frame = 1
Query:  217 TSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            T WS YRA IAEF+AT LFLY++VLTV+G  ++S+TK     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAICG G VK F               +A GY  G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+NK   WDDHWIFWVGPFIG
Sbjct:   31 TKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANF-LADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIG 256          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.273e-88
Identity = 167/250 (66.80%), Postives = 186/250 (74.40%), Query Frame = 1
Query:  151 QSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNT-------KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            +S  GKDY                WSFYRA IAEFIAT LFLY++++TV+G  KS T       +C+ VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK++L RA+ YMV QCLGAICG  +VK F               ++ GY+ G G+ AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAAIIYNKD  WD HWIFWVGPF G
Sbjct:   10 RSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGY-KSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANG-LSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAG 257          
The following BLAST results are available for this feature:
BLAST of CF838768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PIP24_MAIZE2.678e-9067.06Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE2.678e-9067.06Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ2.678e-9068.29Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH5.965e-9074.01Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_MAIZE5.965e-9067.89Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_MAIZE7.791e-9066.94Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP22_MAIZE1.329e-8966.13Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ARATH1.329e-8974.22Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP23_ARATH2.267e-8973.13Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP25_ARATH3.273e-8866.80Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06I21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838768 ID=CF838768; Name=CF838768; organism=Citrus sinensis; type=EST; length=881bp
GATCAAACAGCTACTTGCAAACGACTCAAATCTTTTGTGTCTTTTAGCTA
ATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGGCAAAGAAGAGGACGTTA
GATTAGGAGCCAATAAGTTCACTGAGAGGCAACCGATTGGAACAGCAGCT
CAGAGCCAAGATGGCAAGGACTACGTTGAGCCGCCGCCGGCACCACTCTT
CGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTACAGGGCCGGTATAGCCG
AGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTATTGACAGTGATG
GGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGGAT
TGCATGGGCCTTCGGTGGCATGATCTTCGCGCTCGTTTACTGCACAGCTG
GCATCTCGGGTGGTCATATCAACCCGGCGGTGACATTCGGGCTGTTCTTG
GCGAGGAAGCTGTCGTTGACACGTGCACTTTTCTACATGGTCATGCAGTG
TCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAAGGGTTTCATGGGTGCCG
GCCAATACGGGCGGCTCGGCGGCGGTGCCAATGCTGTAGCTCATGGCTAC
ACCAAGGGTGATGGTCTTGGTGCTGAGATTATTGGTACTTTTGTTCTTGT
CTACACAGTTTTCTCTGCCACTGATGCCAAACGTAGCGCCAGAGACTCTC
ATGTTCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTT
CACTTGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAG
TCTTGGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATT
GGATTTTCTGGGTGGGACCATTCATTGGAGC
back to top