CF838768

Overview
NameCF838768
Unique NameCF838768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 79/220 (35.91%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  220 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            S +F RA +AEF+AT LF++  + + +         S   +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++                  + +  T G  +  E+  T  LV  +F++TD +RS           L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +G
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSAL-----QWASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI--TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVG 211          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.376e-27
Identity = 74/218 (33.94%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  235 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y++ Q LG+I  + ++                  ++ G   G  L  EI+ TF LVYTV+ +A D K+     ++ I+AP+ IGF V    L     TG  +NPA S G A++      W +HW++W GP IG
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALL------VFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIG 225          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26
Identity = 78/220 (35.45%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  220 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            S +F RA +AEF+AT LF++  + + +         S   +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++                  + +  T G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW+GP +G
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSAL-----QWASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI--TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVG 211          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.599e-26
Identity = 78/218 (35.78%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  235 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            +A +AEFIAT LF++  V + +   K  S+      G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   LFY + QCLG+     ++K                 VA G     G+  EII TF LVYTV+ +A D K+ +    + ++AP+ IGF V    LA  P +G  +NPARS G A+       +  +WI+W GP IG
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK-----FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---ASGDFSQNWIYWAGPLIG 224          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-26
Identity = 77/218 (35.32%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  235 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            +A ++EFIAT LF++  V + +   K  S+      G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++    FY + QCLG+I     V   +              VA G    +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A++      +   WI+WVGP +G
Sbjct:   19 KAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSI-----VACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDFSQIWIYWVGPLVG 224          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-26
Identity = 73/216 (33.80%), Postives = 109/216 (50.46%), Query Frame = 1
Query:  232 YRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            +R  +AE I TF  + I V +  G  + +       I  IA+ FG  +  L      ISG HINPAVT G  +  ++S+ +++ Y+ +QC+GAI GA V+K                  +   T G  +  E + TF+LV  V   +D  R    + +   APL +G ++   HL  I +TG  +NPARS G A++ N    W DHW++WVGP +G
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSCTGGSEWSPS-----IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIK-VGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDPGR----TDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNM---WIDHWVYWVGPIVG 225          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 80/223 (35.87%), Postives = 114/223 (51.12%), Query Frame = 1
Query:  220 SWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            S S  +A ++EFIAT LF++  V + +   K  S+      G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY + QCLG+I     V   +              V+ G    +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A++          WI+WVGP +G
Sbjct:   14 SVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI-----VACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDLSQIWIYWVGPLVG 224          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 76/217 (35.02%), Postives = 110/217 (50.69%), Query Frame = 1
Query:  235 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            RA I+EF+AT +F++ +  +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL RALFY + Q LGA     VV   +              +A G      +  E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+G
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGA-----VVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVG 231          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 67/190 (35.26%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGW--DDHWIFWVGPFIG 879
            +G+ G+A+AFG  +  + +    ISG H+NPAV+FGL +  +      L Y++ Q +GAI  AGV+      K                    GYT G G  +E++ T + +  +  ATDA+  A        AP+ IG A+ L+HL +IP+T T +NPARS G A+      GW     W+FWV P IG
Sbjct:   35 IGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALQQLWLFWVAPLIG 215          
BLAST of CF838768 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25
Identity = 75/217 (34.56%), Postives = 109/217 (50.23%), Query Frame = 1
Query:  235 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIG 879
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RA+ Y V Q LGA+         +              +A G      +  E + TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+G
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAAT-----LLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLG 230          
The following BLAST results are available for this feature:
BLAST of CF838768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AQP2_MOUSE3.222e-2735.91Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP1_MEDTR9.376e-2733.94Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP2_RAT1.225e-2635.45Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP_ANTMA1.599e-2635.78Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ARATH2.089e-2635.32Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQP_HAEIX2.089e-2633.80Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP23_ARATH2.728e-2635.87Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP31_ORYSJ6.077e-2635.02Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
AQPZ_PSEPK7.937e-2635.26Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP31_MAIZE1.037e-2534.56Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06I21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838768 ID=CF838768; Name=CF838768; organism=Citrus sinensis; type=EST; length=881bp
GATCAAACAGCTACTTGCAAACGACTCAAATCTTTTGTGTCTTTTAGCTA
ATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGGCAAAGAAGAGGACGTTA
GATTAGGAGCCAATAAGTTCACTGAGAGGCAACCGATTGGAACAGCAGCT
CAGAGCCAAGATGGCAAGGACTACGTTGAGCCGCCGCCGGCACCACTCTT
CGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTACAGGGCCGGTATAGCCG
AGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTATTGACAGTGATG
GGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGGAT
TGCATGGGCCTTCGGTGGCATGATCTTCGCGCTCGTTTACTGCACAGCTG
GCATCTCGGGTGGTCATATCAACCCGGCGGTGACATTCGGGCTGTTCTTG
GCGAGGAAGCTGTCGTTGACACGTGCACTTTTCTACATGGTCATGCAGTG
TCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAAGGGTTTCATGGGTGCCG
GCCAATACGGGCGGCTCGGCGGCGGTGCCAATGCTGTAGCTCATGGCTAC
ACCAAGGGTGATGGTCTTGGTGCTGAGATTATTGGTACTTTTGTTCTTGT
CTACACAGTTTTCTCTGCCACTGATGCCAAACGTAGCGCCAGAGACTCTC
ATGTTCCTATTTTGGCTCCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTT
CACTTGGCTACTATCCCTATTACCGGAACTGGCATCAACCCCGCAAGGAG
TCTTGGAGCTGCAATCATCTACAACAAGGACCACGGTTGGGATGACCATT
GGATTTTCTGGGTGGGACCATTCATTGGAGC
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