CF838787

Overview
NameCF838787
Unique NameCF838787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  K HG P+D+ RH              A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:   64 PFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  +KHG P+D+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   67 PLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  KKHG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   67 PHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  KKHG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   67 PHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  KKHG P+D+ RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   67 PLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  KKHG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:   65 PLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  K+HG PEDD RH              A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R ACG+IGL
Sbjct:   67 PFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.809e-17
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  +KHG P+D+ RH              A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   68 PLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.281e-16
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   25 KKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            K HG PED NRH              +  TV D+ + L GP S+IGR +VVH   DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:   70 KTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CF838787 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.281e-16
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   16 PCWKKHGPPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 273
            P  K HG PED+NRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:   67 PFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of CF838787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SODC_PRIGL2.581e-1750.00Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_HYLLA4.403e-1748.84Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_RAT5.750e-1750.00Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_MOUSE5.750e-1750.00Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_HORSE7.510e-1750.00Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_CAPHI7.510e-1750.00Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CANAL7.510e-1752.33Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_PONPY9.809e-1747.67Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_COLGL1.281e-1649.40Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_ASHGO1.281e-1650.00Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838787 ID=CF838787; Name=CF838787; organism=Citrus sinensis; type=EST; length=429bp
CCGGACCCCACCTTTCCCTGCTGGAAAAAACATGGACCTCCAGAGGATGA
CAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTA
CTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAAT
TCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGG
CAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAG
TAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGAC
AATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATA
TGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTAA
AACTTTGTTGTGTAAAAAAAAAAAAAAAA
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