CF838802

Overview
NameCF838802
Unique NameCF838802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.088e-30
Identity = 66/115 (57.39%), Postives = 81/115 (70.43%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +LKL   +VLC++V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ C++V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 61/107 (57.01%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   35 ALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            ALV+C++V  P++  A++CG VTG LAPCI YL  G      CC GV+ L AAA TT DRQ ACNCLK AAG+I NLNP NA  LP  C V+IPYKIS +T+C+ ++
Sbjct:   11 ALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.354e-29
Identity = 58/114 (50.88%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSA-QAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ C++V GP++A +A+TCG V  ++APCI Y+  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AA ++ PNLN   A G+P+ACGVS+P+ IS +T+C+ V+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   50 ILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            +L T P +   +TCGQVTG+LAPC+ YLRS   +PVP  CCN VR LN AARTT D++TAC CLKQ A ++  LN N A GLP  CGV+IPYKIS +TDC++V
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            AL+  + LVL + +   + A AI+CG V GSLAPC  YL  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A SI  LNP+ A GLP  CGVSIPY IS+ST+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGP-IPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   +  C++V GP+++ A ++CG V+G +APCI YL    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 59/114 (51.75%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   L+ C++V GP+++ A ++CG V  +LA CI Y+  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AA ++   LN   A G+P+ACGV+IPYKIS ST+C  VR
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   35 ALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ALV  +L+  P +A AITCGQV  ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   10 ALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   35 ALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ALV  +L+  P +A AITCGQV  ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   10 ALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF838802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_GOSHI2.088e-3057.39Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_BRANA3.562e-3054.87Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP3_LENCU4.652e-3057.01Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTPA_BRAOT1.354e-2950.88Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP_DAUCA3.015e-2960.19Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP3_ARATH3.938e-2953.10Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTPD_BRAOT6.718e-2951.75Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_ARATH6.718e-2951.75Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP1_ORYSJ8.774e-2956.60Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI8.774e-2956.60Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838802 ID=CF838802; Name=CF838802; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAACCGTCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TCTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
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