CF838802

Overview
NameCF838802
Unique NameCF838802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   26 LVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            + +A+V  +L+    S  AI+CGQV  ++APCI Y R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NA  +P  CGVSIPY IS STDCS+V
Sbjct:   10 VATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   35 ALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            AL+  ++++ P++  AI+CG V+G+L PC+ YL+ GGP P P CC GV+ LN AARTT DR+ ACNCLK +AGSI  L P N   LP  CGV +PY IS ST+C+ +R
Sbjct:   11 ALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   35 ALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ALV  +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   10 ALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 2
Query:    5 SQPSALKLVS--ALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIP--NLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            S    LKLV   A++ C+ V GP +  A++CGQV  +L PCI Y+ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   A GLP  CGV+IPYKIS STDC  ++
Sbjct:    3 SSGQLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            L LV+ +   +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            L LV+ +   +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.687e-28
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   41 VLCI----LVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            VLC+    +V     A AI+CGQVT  L PC  YL +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +N NNA  LP  CG+SI YKI+ + DCSK+
Sbjct:    8 VLCVAVACMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQAI-TCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            +KL   ++ C++V GP++A A+ +CG V G+LA CI YL  G P+   CCNGV +L   A TTPDRQ AC CL+ AA ++ P LN   A GLP AC V+IPYKIS ST+C+ VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   +VLC++V  P  A+A++CGQV   LAPC+ YL+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  ++   A GLP ACGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLG-SCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   ++LC++V  P  A+A+TCGQVT  LAPC+ YL+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
The following BLAST results are available for this feature:
BLAST of CF838802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MAIZE3.334e-2855.45Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP1_LENCU3.334e-2853.70Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLT2B_ORYSJ3.334e-2857.01Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP3_PRUDU4.354e-2852.07Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_ORYSI4.354e-2854.46Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ4.354e-2854.46Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_GERHY5.687e-2855.56Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP2_ARATH1.267e-2752.63Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP2_TOBAC4.814e-2753.15Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLLC4.814e-2752.25Non-specific lipid-transfer protein 1 OS=Solanum l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838802 ID=CF838802; Name=CF838802; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAACCGTCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TCTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
back to top