CF838802

Overview
NameCF838802
Unique NameCF838802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   ++LC++V  P  A+A+TCGQVT  LAPC+ YL+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   ++LC++V  P  A+A+TCGQVT +LAPC+ YL + GP+   CC GV+ L   A+TT DRQTAC CLK AA S   L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            AL+  +  VL + +   + A AITCG V  SL+PC+ YL  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA  +   NP+ A GLP  CGVSIPY IS ST+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGV---NPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            A+ +V+A+V+ +  T   S  AI+CGQV+ ++A C+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN  NA  +P  CGVS+PY IS STDCS+V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            +K   ALV+C++V  PL A+AITCG V   LAPCI YL+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   A  LPR CGVS+PY IS +T+C+ +
Sbjct:    7 VKFTCALVMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   29 VSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            V A    +++    S  A+TCGQV+ ++ PC+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN   A  +P  CGVSIPY IS STDCS+V
Sbjct:   13 VVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   +V C++V  P  A++++CG+VT  LAPC+ YL   GP+   CC GV+ L  AA+T  DR+TAC CLK AA SI  ++   A GLP  CGV+IPYKIS STDCS V+
Sbjct:    6 KIACFVVFCMVVVAP-HAESLSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   23 KLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            K+   ++LC++V  P  A+A+TCGQVT +LAPC+ YL + GP+   CC GV+ L   A+TT DRQ AC CLK AA S  +L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 2
Query:   83 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            +TCGQV G+LA CI +L+ GG +P  CC GV+++  ++RTT DR+  C+CLK AAG++  +NPNNA  LP  CGV+IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 58/109 (53.21%), Postives = 68/109 (62.39%), Query Frame = 2
Query:   29 VSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            V  L+L   + G  +A AITCGQV   L  C+ Y R GG IP  CC GVR+LN  A+TTPDRQTACNCLK        LN     G+P  CGV+IPY I + TDC+KVR
Sbjct:    7 VCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
The following BLAST results are available for this feature:
BLAST of CF838802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_SOLPN6.288e-2752.25Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_SOLPN8.212e-2754.05Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP4_ARATH1.073e-2651.33Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI1.073e-2653.98Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP_BETVU2.389e-2651.35Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP2_SORBI2.389e-2653.21Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP2_SOLLC4.076e-2651.35Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_SOLCI4.076e-2653.15Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_PHAAU2.642e-2554.44Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
SCA_LILLO3.450e-2553.21Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838802 ID=CF838802; Name=CF838802; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAACCGTCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TCTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
back to top