CF838802

Overview
NameCF838802
Unique NameCF838802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    2 KSQPSALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ++  + L LV+ +   +LV    +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC CLK  A SI  +N     G+P  CGVS+P+ IS+STDC+KV
Sbjct:    3 RAAATQLVLVAMVAAMLLVA---TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 2
Query:   80 AITCGQVTGSLAPCIVYLRSGGPIPVPCC-NGVRSLNAAARTTPDRQTACNC-LKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            AI+CGQV+ ++ PC+ Y R  G  P   C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A  +P  CGV +PY IS S DCS+V
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            AL  + A+V   +V    SA A++CG VT S+APC+ Y+      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  NLN  NA  +P  CGVS+ + IS S DCSK+
Sbjct:    9 ALVALVAVVAAAVVAERASA-AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 2
Query:   17 ALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            AL  + A+V   +V    SA A++CG VT S+APC+ Y+      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  NLN  NA  +P  CGVS+ + IS S DCSK+
Sbjct:    9 ALVALVAVVAAAVVAERASA-AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   26 LVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPV-PCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            L++  ++ +L   P +A AI CG V   + PC+ Y++ GGP P   CC+GV++L+  AR+  DRQ+ACNCLK  A  I NLN +NA  +P  CGV++PY IS++ DCS+V
Sbjct:    5 LMAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 2
Query:    2 KSQPSALKLVSALVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            ++  + L LV+ +   +LV       AITCGQV+ +L PC  Y +  G  P   CC+GV+ L   AR+T D+Q  C CLK  AG+    N   A G+P  CGVS+PY IS S DCSK+
Sbjct:    3 RTAATKLALVALVAAMLLVAADA---AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.500e-20
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 2
Query:   38 LVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNP---NNAVGLPRACGVSIPYKISISTDCSKVR 355
            L +C+++       A++C  V   L PC+ Y+  GGP+P  CCNG+ +L + A+T+ DRQ  C C+K A G +  L+P    NA+ LP  CGV +PYK S STDC  ++
Sbjct:    6 LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   20 LKLVSALVLCILVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGG-PIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPY--KISISTDCS 346
            +KL   + + ++  GP++A+A ++CG+V  +L PC  YL +GG   P P CCNGVR LN    TT DR+ AC C+K AA ++ P LN + A G+PR CG+ IPY  +I  +T C+
Sbjct:    5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.302e-19
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   38 LVLCILVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 352
            LV+ IL+      +AI C QV   LA C+ YL++GG     CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   14 LVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CF838802 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   38 LVLCILVTGPL---SAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAG--SIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 355
            L LC+L+       S  AI+C  V  +L PC+VY+  GG IP  CCNG+R L+  A +  D+Q  C C+K   G  S  ++    A  LP  CGV +PYKI  ST+C+ ++
Sbjct:    6 LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of CF838802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP3_HORVU9.396e-2345.76Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_ELECO7.954e-2254.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_ORYSJ1.357e-2146.90Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.357e-2146.90Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT1.357e-2146.36Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP8_HORVU1.149e-2043.22Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP6_ARATH1.500e-2041.28Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP7_ARATH3.342e-2044.35Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTPB_ARATH6.302e-1945.71Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_ARATH1.834e-1840.54Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838802 ID=CF838802; Name=CF838802; organism=Citrus sinensis; type=EST; length=602bp
GAAATCTCAACCGTCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TCTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
ACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTAT
ACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGA
TCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTG
TGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGG
TCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGA
GTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGT
CTCTCTCTACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGT
TGTGTCTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTC
TGTTTATTAAATGAAATCTTGCCTTGTGTTCATTTTAAAAAAAAAAAAAA
AA
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