CF838829

Overview
NameCF838829
Unique NameCF838829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1281 contig Csv1_Contig1281:2..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 83/164 (50.61%), Postives = 101/164 (61.59%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTT---TAVDKGPTKVTTASSTPAA 567
            G G       +  + +G   RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRL +E+ ELRA+K   P  +       LPA+TLSMCP CERV +   TA    P   T+ ++ P A
Sbjct:  153 GGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMH------LPATTLSMCPSCERVASNPATASTSAPAAATSPAAAPTA 310          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   19 QAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQS 603
            ++GG     +    V +E+ E             + + DD+E       G   RKKLRLSKEQS LLE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE LKR   +LTE+NRRL RE+++LRA+           +  P+PA+TLS+CP CER+ T A   G +    A  T    +P + +P  +S
Sbjct:   47 ESGGQPQVVVKREVVRAEEEEYEYEYERALYSSSAAAADDDE-------GCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAAAAGASPTAAADRTNKPTAPHLFSPFAKS 245          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.211e-33
Identity = 85/155 (54.84%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  163 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVIS-PHSCEP---------LPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPA 564
            D G  RKKLRL+KEQS LLE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQRE++ELRA+K  PP   S  H   P         LPA+TL++CP CERV   A      KV  A  T A
Sbjct:  121 DDGSTRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPA---SAAKVVAADGTKA 272          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.211e-33
Identity = 85/155 (54.84%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  163 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVIS-PHSCEP---------LPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPA 564
            D G  RKKLRL+KEQS LLE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQRE++ELRA+K  PP   S  H   P         LPA+TL++CP CERV   A      KV  A  T A
Sbjct:  121 DDGSTRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPA---SAAKVVAADGTKA 272          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 89/171 (52.05%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPH-SCEPLPASTLSMCPRCERVTTTA--VDKGPTKVTTAS----STPAALSP 576
            GSG  DDE+    N DG   RKKLRLSK+Q+ +LE           KQK  LA QL L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRLQ+EV ELRA+K      +SPH      P +TL+MCP CERV+++A  V   P+  TT +     +P  L+P
Sbjct:  146 GSGGSDDEDGG--NGDGS--RKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALK------LSPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAPSTTTTPTVVGRPSPQRLTP 306          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.594e-32
Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   19 QAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQS 603
            ++GG     +    V +E+ E             + + DD+E       G   RKKLRLSKEQS LLE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE LKR   +LTE+NRRL RE+++LRA+           +  P+PA+TLS+CP CER+ T A   G +    A  T    +P + +P  +S
Sbjct:   47 ESGGQPQVVVKREVVRAEEEEYEYEYERALYSSSAAAADDDE-------GCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAA-AGASPTAAADRTNKPTAPHLFSPFAKS 244          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.636e-32
Identity = 86/172 (50.00%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  124 GSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTTAVDKGPTKVTTASSTP-AALSPKVGTPALQ 600
            G  DDE+ S    D    RKKLRLSKEQ+ +LE           KQK  LA QL L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR   +LT++NRRLQ+EV ELRA+K      +SPH    + P +TL+MCP CERV  T+           SS+P   +SP    P  Q
Sbjct:  145 GGSDDEDGSGNGDDSS--RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALK------LSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSPWAAMPLRQ 308          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 75/145 (51.72%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAV 519
            GSGS D+ +++  +V GG  RKKLRLSK+Q+ +LE           KQK  LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKRW   L + NRRL +E+ ELRA+K  P    +P +  P P +TL+MC  C+RV    V
Sbjct:   73 GSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP----TPPAAAP-PLTTLTMCLSCKRVANAGV 212          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 75/145 (51.72%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAV 519
            GSGS D+ +++  +V GG  RKKLRLSK+Q+ +LE           KQK  LA  L L+PRQVEVWFQNRRAR+KLKQTE++CE+LKRW   L + NRRL +E+ ELRA+K  P    +P +  P P +TL+MC  C+RV    V
Sbjct:   73 GSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP----TPPAAAP-PLTTLTMCLSCKRVANAGV 212          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 81/175 (46.29%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGP-PTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGP--------TKVTTASSTPAALSPKV 582
            GSG  DD+       DG   RKKLRLSK+Q+ +LE           KQK  LA +L L+PRQVEVWFQNRRAR+KLKQTE++CEYLKRW   L ++N+RL++E+ +LRA+K  P P   S        A+TL+MCP C RV T      P        +  T +SS+ AA +  V
Sbjct:   99 GSGVDDDD-----GADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAV 268          
The following BLAST results are available for this feature:
BLAST of CF838829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX27_ORYSI8.450e-3450.61Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX15_ORYSI1.104e-3342.23Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX19_ORYSJ3.211e-3354.84Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI3.211e-3354.84Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
ATHB4_ARATH4.193e-3352.05Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX15_ORYSJ1.594e-3242.23Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT3_ARATH4.636e-3250.00Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX28_ORYSJ7.909e-3251.72Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI7.909e-3251.72Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX2_ORYSJ1.349e-3146.29Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838829 ID=CF838829; Name=CF838829; organism=Citrus sinensis; type=EST; length=779bp
TCATCATCACCCTTTCAACAAGCCGGAGGTTCTGCGATGAAGGATTTGGA
CATAAACCAAGTACCATCAGAAGATACTGAATGGAATAATTGGAACACAG
CAACAGCAACAACAACAGGATCAGGAAGCATGGACGATGAAGAAGAGAGC
TGCATCAACGTTGACGGCGGCCCTCCTCGCAAAAAGCTTCGCCTCTCCAA
AGAACAGTCTCGTCTTCTCGAAAAGCAGAAAGAAGAACTGGCTACGCAGT
TGAAGCTGAAGCCACGTCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCC
AGGAGCAAGCTGAAGCAAACGGAGATGGAATGCGAGTACTTGAAGAGATG
GTTTGGTTCATTGACTGAACAAAACAGGAGGCTGCAAAGGGAAGTGGAGG
AGCTCAGGGCTATGAAGGTGGGCCCACCCACCGTGATCTCTCCCCACAGT
TGTGAGCCACTCCCGGCATCAACCCTATCAATGTGTCCACGGTGTGAGCG
CGTGACCACCACCGCCGTTGACAAGGGCCCCACCAAGGTCACCACCGCCT
CCTCCACTCCCGCGGCATTGTCTCCTAAAGTCGGGACGCCGGCCCTCCAG
TCACGGTAGCCTTCGGCGGCCTGATGGAAAGTTAAACGTGGCAAAACATT
AATCAAAAGCAAAAGGAGAAATTAGTTTTAGAGGATGTTCATAGGAAAAG
AAATATGCAAGTGTGCATGCAAGATACCAATGAAGATAAGATACTATCAT
TGATATATATGTGTGGTATCTGATCTGCT
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