CF838833

Overview
NameCF838833
Unique NameCF838833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 83/219 (37.90%), Postives = 111/219 (50.68%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF++T ++VF G GS M +          PS                       SG H NPAVT    VG +ISL R + Y  AQL+G+TV   LL  V  G   +T     + + V    AV  E+++T  LV  V+A+  D ++ S G+ A + IG  V    L G  F G SMNPA SFGPA++   +  HWV+WVGPL+G  LA ++Y F
Sbjct:   25 RALFAEFLATGLYVFFGVGSVMRWPTAL------PSVLQIAITFNLVTAMAVQVTW-KASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETLGINVVRNSVSTGQAVAVELLLTLQLVLCVFAST-DSRQTS-GSPATM-IGISVALGHLIGIHFTGCSMNPARSFGPAIIIGKFTVHWVFWVGPLMGALLASLIYNF 233          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 81/233 (34.76%), Postives = 117/233 (50.21%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK-FVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 782
            RA +AEFI+TL+F++    + +   K T  G                           ISGGH+NPAVTFG F+   +SL+R + Y IAQ LG+      +K F+     T    A  ++ G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP + G LA   Y  + +  S
Sbjct:   38 RALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFL-GALAAAAYHQYILRAS 266          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 73/227 (32.16%), Postives = 114/227 (50.22%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA +AEFI+TL+F++    + + +   +                              ISGGH+NPAVTFG  +   +S++R ++Y +AQ LG  V   ++K +     N     A  ++SG     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++W GP IG   A   +++
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQY 263          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.755e-25
Identity = 79/238 (33.19%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAF-NKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQL 794
            RA +AEF++TLIF++    + + + N+     A T                        +SGGH+NPAVT G F G  +SL+R +LY +AQ LG+     ++K +     +     A  +S G  A  A+  EIV TF LVYTV+ +A DPK+ +    +  + P+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP+IG  LA   ++     ++ + L
Sbjct:   44 RALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVF-SATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.598e-25
Identity = 81/219 (36.99%), Postives = 111/219 (50.68%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            +A  AEF++T ++VF G GS + +          PS                       SG H NPAVT    VG +ISL R + Y  AQL G+TV   LL  VT G   +T     + +      AV  E+V+T  LV  V+A+ +D ++ +LG+ A + IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLPWP------VALPSVLQVAITFNLATATAVQISWKT-SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFAS-MDSRQ-TLGSPAAM-IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.699e-25
Identity = 79/231 (34.20%), Postives = 115/231 (49.78%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF--------VTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA +AEFI+TL+F++    + +     T  G                           ISGGH+NPAVTFG F+   +SL R + Y +AQ LG+     L+K         +  G  T A   S+G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+HW++WVGP +G   A   +++
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG----TALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQY 259          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.699e-25
Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG--QTT--SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 761
            RA +AEF++T +F++    + M  N  T   A                          ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K    G  +TT   A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA I ++
Sbjct:   54 RAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQ 276          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.047e-24
Identity = 79/233 (33.91%), Postives = 115/233 (49.36%), Query Frame = 3
Query:   93 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 758
            E T     RA +AEF++T +F++    + M  +K +   A                          ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K        G    A A++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   S +W++HW++WVGP IG  LA I +
Sbjct:   46 ELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYH 275          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 75/232 (32.33%), Postives = 117/232 (50.43%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTH---NGANTPSXXXXXXXXXXXXXXXXXXXXX---NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK----FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 761
            RA +AEF++TL+F++    + + +   T    NGA+                            +SGGH+NPAVT G F+   +SL+R +LY  AQ LG+     L+K     + +     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   + +W + W++WVGP IG  +A + ++
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQ 269          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.367e-24
Identity = 81/242 (33.47%), Postives = 118/242 (48.76%), Query Frame = 3
Query:   87 PREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 761
            P E +     RA +AEFI+T +F++    + M   +  +  A+                         ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     SWD+HW++WVGP IG  LA + ++
Sbjct:   43 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQ 275          
The following BLAST results are available for this feature:
BLAST of CF838833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
AQP6_HUMAN1.615e-2537.90Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
PIP27_ARATH2.109e-2534.76Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP26_ORYSJ2.109e-2532.16Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ2.755e-2533.19Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
AQP6_RAT3.598e-2536.99Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
PIP28_ARATH4.699e-2534.20Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ4.699e-2534.51Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE1.047e-2433.91Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP24_ORYSJ1.367e-2432.33Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH1.367e-2433.47Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838833 ID=CF838833; Name=CF838833; organism=Citrus sinensis; type=EST; length=832bp
GTGAACCAGTACTATTCACACCCCAAAGGTTCAATCTTCATCGTTTGATC
TCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGAC
TCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAA
TATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACT
CACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCA
CGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTG
GCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATC
TCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCAC
CGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTG
CTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAG
ATCGTGATGACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGA
CCCAAAGAAGGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCA
TTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTTTGATGGAGCTTCAATG
AACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAAGCTGGAGCTGGGACAA
CCACTGGGTCTACTGGGTCGGGCCACTCATCGGTGGTGGGCTAGCTGGCA
TCGTCTACGAGTTCTTCTTCATTAACCAGTCTCACGAGCAGCTCCCAACA
ACCGAGTACTAAGCTAAAAGCTTGCCATCTAT
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