CF838833

Overview
NameCF838833
Unique NameCF838833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.447e-34
Identity = 85/219 (38.81%), Postives = 115/219 (52.51%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF +TL +VF G GS + +       A  P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++    V    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF +TL +VF G GS + +       A  P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 219          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 86/219 (39.27%), Postives = 117/219 (53.42%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF +TL +VF G G+ + +       A  P               X      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 83/219 (37.90%), Postives = 117/219 (53.42%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF  T+ +VF G G+ + +       A  P+                     ++SG H+NPAVTF   +G  +SL R I Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASMNPA SF PA+++ ++ NHWVYWVGP+IGG L G+VY+F
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWVGPIIGGALGGLVYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 84/219 (38.36%), Postives = 118/219 (53.88%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF ++L +VF G G+ + +       A  P                      +ISG HVNPAVTF   VG  +SLLR I Y +AQLLG+     +L  VT        AL++   GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.749e-33
Identity = 84/219 (38.36%), Postives = 116/219 (52.97%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF +TL +VF G G+ + +       A  P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.749e-33
Identity = 84/219 (38.36%), Postives = 115/219 (52.51%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 764
            RA  AEF +TL +VF G G+ + +          P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 6.123e-33
Identity = 80/227 (35.24%), Postives = 119/227 (52.42%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 788
            RA +AEF++T +FVF   GS + F     N                           +ISG H+NPAVT G  +   IS+ R ++Y IAQ +G+ VA  +L  +T+  T ++     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.770e-32
Identity = 79/227 (34.80%), Postives = 117/227 (51.54%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN---GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 788
            RA +AEF++  +FVF   GS + F     N                           +ISG H+NPAVT G  +   IS+ R ++Y IAQ +G+ VA  +L  +T+   G +     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
BLAST of CF838833 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.770e-32
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 3
Query:  117 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 788
            RA +AEF++  +FVF   GS + FN                                +ISG H+NPAVT G  +   IS+LR ++Y IAQ +G+ VA  +L  +T+    ++     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V    L    + G  +NPA SFG A+++ ++ NHW++WVGP IGG LA ++Y+F    +S +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSD 237          
The following BLAST results are available for this feature:
BLAST of CF838833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
MIP_HUMAN9.447e-3438.81Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_RAT1.234e-3338.81Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_CAVPO1.234e-3339.27Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_RANPI1.611e-3337.90Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_BOVIN1.611e-3338.36Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_MOUSE2.749e-3338.36Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_CANFA2.749e-3338.36Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP1_HUMAN6.123e-3335.24Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_PONAB6.770e-3234.80Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE6.770e-3234.80Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838833 ID=CF838833; Name=CF838833; organism=Citrus sinensis; type=EST; length=832bp
GTGAACCAGTACTATTCACACCCCAAAGGTTCAATCTTCATCGTTTGATC
TCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGAC
TCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAA
TATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACT
CACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCA
CGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTG
GCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATC
TCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCAC
CGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTG
CTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAG
ATCGTGATGACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGA
CCCAAAGAAGGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCA
TTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTTTGATGGAGCTTCAATG
AACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAAGCTGGAGCTGGGACAA
CCACTGGGTCTACTGGGTCGGGCCACTCATCGGTGGTGGGCTAGCTGGCA
TCGTCTACGAGTTCTTCTTCATTAACCAGTCTCACGAGCAGCTCCCAACA
ACCGAGTACTAAGCTAAAAGCTTGCCATCTAT
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