CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL24_ARATH (GDSL esterase/lipase At1g58480 OS=Arabidopsis thaliana GN=At1g58480 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.528e-26
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   90 IQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            I A +PA+IVFGDS +D GNNN +PT+ + NF PYG+D+ GG ATGRFS+G++ +D I+E LG+  T+PAY++      D   GVTFAS  TGYD  T+ ++
Sbjct:   24 INATIPALIVFGDSIMDTGNNNNLPTLLKCNFPPYGKDYPGGDATGRFSDGRVPSDLIAEKLGLAKTLPAYMNSYLKPEDLLKGVTFASRGTGYDPLTAKIM 125          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL86_ARATH (GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.621e-25
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3
Query:   33 AYAYLIWFLLCQFLVFVSEIQAKLPA------------VIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNV 392
            +Y   I FL   F+ F S      PA            ++VFGDS+VD GNNN+I TV + NF PYG DF     TGRF NG++ TDFI+  +GVK  +P YLDP   I++  +GV+FASA +GYD  T  +
Sbjct:   10 SYVSFILFLFLFFISFSSSTSKLEPAKSEPKRKHSVSAILVFGDSTVDPGNNNYIDTVFKCNFPPYGLDFRNKTPTGRFCNGRLVTDFIASYIGVKENVPPYLDPNLGINELISGVSFASAGSGYDPLTPTI 141          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL1_ARATH (GDSL esterase/lipase EXL1 OS=Arabidopsis thaliana GN=EXL1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.621e-25
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSVEP 410
            +PAVIVFGDS VDAGNN+ + T AR ++ PYG DF+GG ATGRFSNGK+  D ++E LG+KP IPAY +P     +  TGVTFAS   GY   T+ + V   P
Sbjct:   50 VPAVIVFGDSIVDAGNNDDMITEARCDYAPYGIDFDGGVATGRFSNGKVPGDIVAEELGIKPNIPAYRNPNLKPEELLTGVTFASGGAGYVPLTTKIAVGGIP 152          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL2_ARATH (GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana GN=EXL2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.376e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFI-PTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGY 371
            PA+IVFGDS VDAGNN+ I  T+AR N+ PYG DF+GG  TGRF NGK+ATDFI+   G+KP+IPAY +P     D  TGVTFAS   GY
Sbjct:   46 PAIIVFGDSIVDAGNNDDIMTTLARCNYPPYGIDFDGGIPTGRFCNGKVATDFIAGKFGIKPSIPAYRNPNLKPEDLLTGVTFASGGAGY 135          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL89_ARATH (GDSL esterase/lipase At5g63170 OS=Arabidopsis thaliana GN=At5g63170 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.797e-24
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 3
Query:   72 LVFVSEIQA-KLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNV 392
            ++ VS + A  +PAVI FGDS +D GNNN++ T+ + NF PYGRDF   RATGRF NG+I TD I+E LG+K  +PAY  P    +D  TGV+FAS  +G D  T+ +
Sbjct:   15 VISVSIVHAGNIPAVIAFGDSILDTGNNNYLMTLTKVNFYPYGRDFVTRRATGRFGNGRIPTDLIAEGLGIKNIVPAYRSPFLEPNDILTGVSFASGGSGLDPMTARI 122          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL90_ARATH (GDSL esterase/lipase At5g42170 OS=Arabidopsis thaliana GN=At5g42160/At5g42170 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.987e-23
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            +P +I FGDS VD+GNNN + T  + NF PYG+DF G  ATGRFS+G++ +D ++E LG+  TIPAYL+P     D   GV FAS  +GYD  T+ ++
Sbjct:   48 IPGIITFGDSIVDSGNNNHLRTALKCNFPPYGKDFPGKIATGRFSDGRVPSDIVAERLGIAETIPAYLNPKLKNEDLLKGVNFASGGSGYDPLTAKLV 145          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: APG_ARATH (Anter-specific proline-rich protein APG OS=Arabidopsis thaliana GN=APG PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            +PAV  FGDS  D GNNN + T  +SN++PYG DF    ATGRFSNG +A+D++++ +GVK  +PAYLDP    +D  TGV+FAS   GY+  TS
Sbjct:  202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVKEIVPAYLDPKIQPNDLLTGVSFASGGAGYNPTTS 296          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: APG2_ARATH (GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.780e-23
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   54 FLLCQFLVFVSEIQAK----LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDN 377
            FLL   +  +S +Q      +PA++ FGDS VD GNNN++PT+ R+++ PYGRDF   +ATGRF NGK+ATD  +E LG     PAYL P  +  +   G  FASAA+GYD+
Sbjct:    8 FLLLTLVSTLSILQISFAQLVPAIMTFGDSVVDVGNNNYLPTLFRADYPPYGRDFANHKATGRFCNGKLATDITAETLGFTKYPPAYLSPEASGKNLLIGANFASAASGYDD 119          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL4_ARATH (GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            PA+  FGDS +D GNN++I T+ ++NF PYG +F     TGRF NGKI +DFI++ +GVKP +PAYL P     D  TGV+FAS  +GYD  T  V+ ++
Sbjct:   77 PAIFAFGDSILDTGNNDYILTLIKANFLPYGMNFPDKVPTGRFCNGKIPSDFIADYIGVKPVVPAYLRPGLTQEDLLTGVSFASGGSGYDPLTPIVVSAI 176          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL30_ARATH (GDSL esterase/lipase At1g73610 OS=Arabidopsis thaliana GN=At1g73610 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            A+  FGDS +D GNNN + +V++ NF PYGRDF GGRATGRF NG++ +D I+E LG+K  +PAY DP    +D  TGV FAS  +G D  T+    S+
Sbjct:   35 ALFAFGDSILDTGNNNLLLSVSKVNFYPYGRDFIGGRATGRFGNGRVFSDIIAEGLGLKNLLPAYRDPYLWNNDLTTGVCFASGGSGLDPITARTTGSI 133          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GDL24_ARATH9.528e-2651.96GDSL esterase/lipase At1g58480 OS=Arabidopsis thal... [more]
GDL86_ARATH3.621e-2544.70GDSL esterase/lipase At5g45960 OS=Arabidopsis thal... [more]
EXL1_ARATH3.621e-2555.34GDSL esterase/lipase EXL1 OS=Arabidopsis thaliana ... [more]
EXL2_ARATH1.376e-2462.22GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana ... [more]
GDL89_ARATH1.797e-2450.93GDSL esterase/lipase At5g63170 OS=Arabidopsis thal... [more]
GDL90_ARATH1.987e-2350.00GDSL esterase/lipase At5g42170 OS=Arabidopsis thal... [more]
APG_ARATH5.780e-2352.63Anter-specific proline-rich protein APG OS=Arabido... [more]
APG2_ARATH5.780e-2348.21GDSL esterase/lipase APG OS=Arabidopsis thaliana G... [more]
GDL4_ARATH7.549e-2350.00GDSL esterase/lipase At1g20120 OS=Arabidopsis thal... [more]
GDL30_ARATH7.549e-2351.52GDSL esterase/lipase At1g73610 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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