CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL4_ARATH (GDSL esterase/lipase EXL4 OS=Arabidopsis thaliana GN=EXL4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.288e-22
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   45 LIWFLLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSVEP 410
            L+  L   + +    +    PA++ FGDS +D GNNNF+ T  + N  PYGR F+  RATGRF NG++ +D ++E LG+K  +PAY     + SD  TGV FAS   G D  TS +L  + P
Sbjct:    7 LVLTLFSSYFISTDAVNGSFPALLAFGDSILDTGNNNFLLTFMKGNIWPYGRSFSMRRATGRFGNGRVFSDIVAEGLGIKKILPAYRKLFNSPSDLRTGVCFASGGAGVDPVTSKLLRVLTP 128          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL3_ARATH (GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.682e-22
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            +PAVI FGDS VD G NN + TV + +F PYG +F  G ATGRF +G++  D ++E LG+K  +PAYLDP     D  TGV+FAS  +GYD  T  ++  +
Sbjct:   41 IPAVIAFGDSIVDTGMNNNVKTVVKCDFLPYGINFQSGVATGRFCDGRVPADLLAEELGIKSIVPAYLDPNLKSKDLLTGVSFASGGSGYDPITPKLVAVI 141          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL85_ARATH (GDSL esterase/lipase At5g45950 OS=Arabidopsis thaliana GN=At5g45950 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.869e-22
Identity = 49/95 (51.58%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNV 392
            +++VFGDSSVD GNNNFI T  + NF PYG +F   + TGR  +G +A D+I+EA+G  P IPA+LDP+   +D   G +FASA +GYD+ T+N+
Sbjct:   40 SILVFGDSSVDPGNNNFIKTEMKGNFPPYGENFINHKPTGRLCDGLLAPDYIAEAMGY-PPIPAFLDPSLTQADLTRGASFASAGSGYDDLTANI 133          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL73_ARATH (GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.869e-22
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   27 KMAYAYLIWF-LLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            KM    L+ F ++  F   V   +  +PA+I+ GDS VDAGNNN + T+ ++NF PYGRDF    ATGRFSNGK+ATDF +E+LG       YL    N ++  TG  FAS A+GYD+ T+
Sbjct:    2 KMFIIMLMTFSVIACFYAGVGTGEPLVPALIIMGDSVVDAGNNNRLNTLIKANFPPYGRDFLAHNATGRFSNGKLATDFTAESLGFTSYPVPYLSQEANGTNLLTGANFASGASGYDDGTA 122          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL72_ARATH (GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana GN=At5g03810 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.893e-22
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = 3
Query:   69 FLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            F   V   +  +PA+I+ GDS VDAGNNN   T+ ++NF PYGRDF    ATGRFSNGK+ATDF +E LG      AYL    N ++  TG  FAS A+G+D+AT+
Sbjct:   17 FYAGVGTGETLVPALIIMGDSVVDAGNNNHRITLVKANFPPYGRDFVAHSATGRFSNGKLATDFTAENLGFTSYPVAYLSQEANETNLLTGANFASGASGFDDATA 122          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL44_ARATH (GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.391e-22
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNF-IPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            PA+++FGDS+VD GNNN+ +PT+ R+   PYG D   G+A GRFSNGK+ +D I+  L +K  IP +L P  +  D  TGV FASA  GYD+ TS
Sbjct:   34 PAILIFGDSTVDTGNNNYPLPTIFRAEHFPYGMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFLQPNLSDQDILTGVCFASAGAGYDDLTS 128          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL43_ARATH (GDSL esterase/lipase At2g31540 OS=Arabidopsis thaliana GN=At2g31540 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.391e-22
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNF-IPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            PA+++FGDS+VD GNNN+ +PT+ R+   PYG D   G+A GRFSNGK+ +D I+  L +K  IP +L P  +  D  TGV FASA  GYD+ TS
Sbjct:   34 PAILIFGDSTVDTGNNNYPLPTIFRAEHFPYGMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFLQPNLSDQDILTGVCFASAGAGYDDLTS 128          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL5_ARATH (GDSL esterase/lipase At1g23500 OS=Arabidopsis thaliana GN=At1g23500 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.347e-22
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            A+  FGDS +D GNNN + T+++ NF PYGR+F GG+ATGRF NG++ +D I+E L VK  +PAY DP  + +D  TGV FAS  +G D  T+
Sbjct:   35 ALFAFGDSILDTGNNNNLNTLSKCNFFPYGRNFIGGKATGRFGNGRVFSDMIAEGLNVKKLLPAYRDPNLSKNDLPTGVCFASGGSGLDERTA 127          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL78_ARATH (GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.172e-21
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   72 LVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            ++ V + Q  +PA+ +FGDS VD GNNN I T+ ++NF PYGRDF     TGRF NGK+ATDF +E LG K    AYL       +   G  FASAA+GY + T+ +  ++
Sbjct:    8 VMVVMKAQPLVPAIFIFGDSVVDVGNNNDIYTIVKANFPPYGRDFTTHTPTGRFCNGKLATDFTAENLGFKSYPQAYLSKKAKGKNLLIGANFASAASGYYDGTAKLYSAI 118          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL75_ARATH (GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.142e-21
Identity = 59/113 (52.21%), Postives = 70/113 (61.95%), Query Frame = 3
Query:   51 WFLLCQFLVFV-------SEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            WFL+    VFV       SE  A  PA+ VFGDS VD GNNN + ++ARSN+ PYG DF G + TGRFSNGK   DFI E LG+ P IPA++D      D   GV +ASAA G
Sbjct:   27 WFLV----VFVLAGGEDSSETTAMFPAMFVFGDSLVDNGNNNHLNSLARSNYLPYGIDFAGNQPTGRFSNGKTIVDFIGELLGL-PEIPAFMDTVDGGVDILHGVNYASAAGG 134          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXL4_ARATH1.288e-2241.80GDSL esterase/lipase EXL4 OS=Arabidopsis thaliana ... [more]
EXL3_ARATH1.682e-2248.51GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana ... [more]
GDL85_ARATH2.869e-2251.58GDSL esterase/lipase At5g45950 OS=Arabidopsis thal... [more]
GDL73_ARATH2.869e-2247.11GDSL esterase/lipase At5g03820 OS=Arabidopsis thal... [more]
GDL72_ARATH4.893e-2250.94GDSL esterase/lipase At5g03810 OS=Arabidopsis thal... [more]
GDL44_ARATH6.391e-2251.58GDSL esterase/lipase At2g31550 OS=Arabidopsis thal... [more]
GDL43_ARATH6.391e-2251.58GDSL esterase/lipase At2g31540 OS=Arabidopsis thal... [more]
GDL5_ARATH8.347e-2251.61GDSL esterase/lipase At1g23500 OS=Arabidopsis thal... [more]
GDL78_ARATH3.172e-2145.95GDSL esterase/lipase At5g22810 OS=Arabidopsis thal... [more]
GDL75_ARATH4.142e-2152.21GDSL esterase/lipase At5g08460 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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