CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: APG_BRANA (Anther-specific proline-rich protein APG (Fragment) OS=Brassica napus GN=APG PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.205e-20
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDP------AYNISDFATGVTFASAATGYDNATS 386
            +PAV  FGDS  D GNNN + T  + N++PYG DF  G ATGRFSNG++A+D+IS+ LGVK  +PAY+D           SD  TGV+FAS   GY   TS
Sbjct:  123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTS 223          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL59_ARATH (GDSL esterase/lipase At3g53100 OS=Arabidopsis thaliana GN=At3g53100 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   57 LLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            LL     F     A +PA+I+FGDS VD GNNN + ++ +SNF PYGRDF   R TGRF NGK+A DF +E LG     PA+L    +  +   G  FASA++GY +ATS
Sbjct:   12 LLLVSCFFCKSKGAVVPALIMFGDSIVDVGNNNNLLSIVKSNFLPYGRDFIDQRPTGRFCNGKLAVDFSAEYLGFSSYPPAFLSREASNENILIGANFASASSGYYDATS 121          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL41_ARATH (GDSL esterase/lipase At2g30220 OS=Arabidopsis thaliana GN=At2g30220 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 3
Query:   24 KKMAYAYLIWFLLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIP-TVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            K + +   +  LL       +  Q   PA+++FGDS+ D GNNN+    V ++N  PYG D  G  A GRFSNGK+ +D IS  L +K  +P +L P  +  D  TGV FASA  GYD+ TS
Sbjct:    5 KTIVFGLFVATLLVSCNADANTTQPLFPAILIFGDSTADTGNNNYYSQAVFKANHLPYGVDLPGHEANGRFSNGKLISDVISTKLNIKEFVPPFLQPNISDQDIVTGVCFASAGAGYDDETS 126          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL42_ARATH (GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNF-IPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            Q   PA+++FGDS+VD GNNN+   T+ ++   PYG D  G  A GR+SNGK+ +D I+  L +K  +P +L P  +  D  TGV+FASA  GYD+ +S
Sbjct:   29 QPLFPAILIFGDSTVDTGNNNYHSQTIFKAKHLPYGVDLPGHEANGRYSNGKVISDVIASKLNIKELVPPFLQPNISHQDIVTGVSFASAGAGYDDRSS 127          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL39_ARATH (GDSL esterase/lipase At2g24560 OS=Arabidopsis thaliana GN=At2g24560 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNF-IPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            Q   PA+++FGDS+VD GNNN+   T+ ++   PYG D    +A+GRF+NGKI +D I+  L +K  +P +L P  +  +  TGV FASA  GYD+ TS
Sbjct:   29 QPLFPAILIFGDSTVDTGNNNYHSQTIFKAKHLPYGIDLPNHKASGRFTNGKIFSDIIATKLNIKQFVPPFLQPNLSDQEIVTGVCFASAGAGYDDHTS 127          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL23_ARATH (GDSL esterase/lipase At1g58430 OS=Arabidopsis thaliana GN=At1g58430 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   84 SEIQAKLPAVIVFGDSSVDAGNNNF-IPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATS 386
            ++ Q   PA+++FGDS+VD GNNN+   T+ R+   PYG D       GRFSNGKI +D I+  L +K  +P +L P     +  TGV FASA  GYD+ TS
Sbjct:   27 AKTQPLFPAILIFGDSTVDTGNNNYPSQTIFRAKHVPYGIDLPNHSPNGRFSNGKIFSDIIATKLNIKQFVPPFLQPNLTDQEIVTGVCFASAGAGYDDQTS 128          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL33_ARATH (GDSL esterase/lipase At2g04020 OS=Arabidopsis thaliana GN=At2g04020 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISD-FATGVTFASAATGYDNATSNV 392
            PA  V GDS VD GNNN +PT+ R+N+ PYG DF GG+ATGRFSNGK   D+I+    + P +PAYL  + +  D  +TG+ +ASA  G    T  +
Sbjct:   42 PAFYVIGDSLVDPGNNNHLPTMIRANYPPYGSDFEGGKATGRFSNGKTIADYIAIYYKL-PLVPAYLGLSDDRKDTISTGMNYASAGCGIRRLTGKI 137          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL32_ARATH (GDSL esterase/lipase At2g03980 OS=Arabidopsis thaliana GN=At2g03980 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAY-NISDFATGVTFASAATG 368
            PA  V GDS VD+GNNN + T+ +SNF PYG DF GG+ATGRFSNGK   D+I+   G+ P +PAYL  +    +  +TG+ +ASA  G
Sbjct:   42 PAFYVIGDSLVDSGNNNHLTTMVKSNFPPYGSDFEGGKATGRFSNGKTIADYIAIYYGL-PLVPAYLGLSQEEKNSISTGINYASAGCG 129          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL15_ARATH (GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18
Identity = 55/118 (46.61%), Postives = 69/118 (58.47%), Query Frame = 3
Query:   45 LIWFLLC-QFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            ++  LLC  F V  ++ QA++P   VFGDS VD GNNN + ++ARSN+ PYG DF G   TGRFSNGK   D I+E LG    IPAY     +     +GV +ASAA G    T   L
Sbjct:   10 VVLVLLCFGFSVVKAQAQAQVPCFFVFGDSLVDNGNNNGLISIARSNYFPYGIDFGG--PTGRFSNGKTTVDVIAELLGFNGYIPAY--NTVSGRQILSGVNYASAAAGIREETGRQL 123          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL6_ARATH (GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana GN=EXL6 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3
Query:   54 FLLCQFLVFV----SEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLD-PAYNISDFATGVTFASAATGYDNATSNVL 395
            F+L  F ++V    +E      A+  FGDS +D GNNNF+ T+ + N+ PYG  F+    TGRF NG++ TD ++E L +K  +PAY      +  D  TGV FAS  +G D+ TS  L
Sbjct:    7 FVLSLFSIYVLSSAAEKNTSFSALFAFGDSVLDTGNNNFLLTLLKGNYWPYGLSFDYKFPTGRFGNGRVFTDIVAEGLQIKRLVPAYSKIRRISSEDLKTGVCFASGGSGIDDLTSRTL 125          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
APG_BRANA1.205e-2051.49Anther-specific proline-rich protein APG (Fragment... [more]
GDL59_ARATH2.056e-2048.18GDSL esterase/lipase At3g53100 OS=Arabidopsis thal... [more]
GDL41_ARATH2.056e-2041.80GDSL esterase/lipase At2g30220 OS=Arabidopsis thal... [more]
GDL42_ARATH1.333e-1945.45GDSL esterase/lipase At2g30310 OS=Arabidopsis thal... [more]
GDL39_ARATH8.638e-1945.45GDSL esterase/lipase At2g24560 OS=Arabidopsis thal... [more]
GDL23_ARATH1.473e-1845.10GDSL esterase/lipase At1g58430 OS=Arabidopsis thal... [more]
GDL33_ARATH5.599e-1848.45GDSL esterase/lipase At2g04020 OS=Arabidopsis thal... [more]
GDL32_ARATH5.599e-1851.69GDSL esterase/lipase At2g03980 OS=Arabidopsis thal... [more]
GDL15_ARATH7.312e-1846.61GDSL esterase/lipase At1g29670 OS=Arabidopsis thal... [more]
EXL6_ARATH1.247e-1740.34GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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