CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: EXL5_ARATH (GDSL esterase/lipase EXL5 OS=Arabidopsis thaliana GN=EXL5 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 3
Query:   15 MKKKKMAYAYLIWFLLCQFLVFVSEIQA----KLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFI---------------SEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSVEP 410
            M +KKM        +L  F ++   I+A      PA++ FGDS VD GNNN++ T+ + N+ PYG +F+    TGRF NG++ +D +               +E LG+K  +PAY       SD  TGV+FAS   G D  TS +L  + P
Sbjct:    1 MFRKKM-------LVLALFSIYFLSIEAVRNESFPALLAFGDSMVDTGNNNYLLTLMKGNYWPYGWNFDSKIPTGRFGNGRVFSDVVGIILKSSLQCFFVISAEGLGIKRIVPAYRKLYIAPSDLKTGVSFASGGAGVDPVTSKLLRVLSP 144          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.629e-17
Identity = 51/118 (43.22%), Postives = 70/118 (59.32%), Query Frame = 3
Query:   60 LCQFLV----FVSEI---QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNV 392
            LCQ +V    F SE+     K+PA  VFGDS VDAGNNN++ T++++N+ P G DF  G  TGRF+NG+   D + +ALG     P YL P  + S    GV +AS  +G  N+T  +
Sbjct:    7 LCQIIVLSVLFFSEVCLAGKKIPANFVFGDSLVDAGNNNYLATLSKANYVPNGIDF--GSPTGRFTNGRTIVDIVYQALGSDELTPPYLAPTTSGSLILNGVNYASGGSGILNSTGKL 122          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL28_ARATH (GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            QA++PA+ V GDS VDAGNNNF+ TVAR+NF PYG D N  + TGRFSNG    D ++  L + P+ P + DP  + +    GV +ASAA G
Sbjct:   36 QARVPAMFVLGDSLVDAGNNNFLQTVARANFLPYGIDMN-YQPTGRFSNGLTFIDLLARLLEI-PSPPPFADPTTSGNRILQGVNYASAAAG 125          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.056e-16
Identity = 47/92 (51.09%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            Q   PA  VFGDS VD+GNNN+IPT+AR+N+ PYG DF  G  TGRF NG+   D+ +  LG+ P +P YL P     +   GV +ASAA G
Sbjct:   25 QPLAPAFFVFGDSLVDSGNNNYIPTLARANYFPYGIDF--GFPTGRFCNGRTVVDYGATYLGL-PLVPPYLSPLSIGQNALRGVNYASAAAG 113          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 3
Query:   69 FLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            F+V     Q K  A  VFGDS VD GNN+++ T AR++  PYG D+   R TGRFSNG    D ISEA+G+  T+P YL P     +   G  FASA  G  N T    V++
Sbjct:   16 FIVTFLAPQVKSRAFFVFGDSLVDNGNNDYLVTTARADNYPYGIDYPTRRPTGRFSNGLNIPDIISEAIGMPSTLP-YLSPHLTGENLLVGANFASAGIGILNDTGIQFVNI 126          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.012e-16
Identity = 53/118 (44.92%), Postives = 66/118 (55.93%), Query Frame = 3
Query:   60 LCQFLVFVSE--IQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALG-VKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSV 404
            +  FLVFV    I  +  A  VFGDS VD+GNNN++ T AR++  PYG DF   R TGRFSNG    D ISEA+G  +P +P YL P         G  FASA  G  N T    +++
Sbjct:   10 MSMFLVFVMSGPIVVEGRAFFVFGDSLVDSGNNNYLVTTARADSPPYGIDFPTRRPTGRFSNGLNIPDLISEAIGNEEPPLP-YLSPELRGRSLLNGANFASAGIGILNDTGFQFINI 126          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 46/92 (50.00%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNAT 383
            A  VFGDS VD+GNNN++ T AR++  PYG D+  GR TGRFSNG    D ISE +G +PT+P  L P         G  FASA  G  N T
Sbjct:   31 AFFVFGDSLVDSGNNNYLVTTARADSPPYGIDYPTGRPTGRFSNGLNLPDIISEQIGSEPTLP-ILSPELTGEKLLIGANFASAGIGILNDT 121          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL81_ARATH (GDSL esterase/lipase At5g41890 OS=Arabidopsis thaliana GN=At5g41890 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  117 VFGDSSVDAGNNNFIPTVARSNFQPYGRDF--NGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVSVEP 410
            +FGDS VD GNNN+I T+++++  PYG DF  + G+ TGRF+NG+  +D + EALG K   P YL+P    +    G+ +AS A G  + T  + +   P
Sbjct:   28 IFGDSLVDVGNNNYIFTLSKADSSPYGIDFAPSNGQPTGRFTNGRTISDIVGEALGAKSPPPPYLEPNTEANTIRNGINYASGAAGILDDTGLLFIGRVP 127          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL29_ARATH (GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  102 LPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            +PA+ VFGDS +D GNNN IP+ A++N+ PYG DFNGG  TGRF NG    D I++ LG+ P IPAY +   +      GV +ASAA G
Sbjct:   53 VPALFVFGDSLIDNGNNNNIPSFAKANYFPYGIDFNGG-PTGRFCNGLTMVDGIAQLLGL-PLIPAYSEATGD--QVLRGVNYASAAAG 137          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 48/97 (49.48%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNAT 383
            QA   A +VFGDS VD GNN+F+ T AR++  PYG DF   R TGRFSNG    D ISE LG +  +P YL P         G  FASA  G  N T
Sbjct:   25 QANARAFLVFGDSLVDNGNNDFLATTARADNYPYGIDFPTHRPTGRFSNGLNIPDLISEHLGQESPMP-YLSPMLKKDKLLRGANFASAGIGILNDT 120          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EXL5_ARATH1.247e-1735.76GDSL esterase/lipase EXL5 OS=Arabidopsis thaliana ... [more]
GDL64_ARATH1.629e-1743.22GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
GDL28_ARATH8.084e-1751.09GDSL esterase/lipase At1g71250 OS=Arabidopsis thal... [more]
GLIP7_ARATH1.056e-1651.09GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
LTL1_ARATH2.352e-1644.64GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL77_ARATH4.012e-1644.92GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
GDL67_ARATH5.240e-1650.00GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL81_ARATH6.844e-1641.00GDSL esterase/lipase At5g41890 OS=Arabidopsis thal... [more]
GDL29_ARATH1.991e-1551.69GDSL esterase/lipase At1g71691 OS=Arabidopsis thal... [more]
GDL79_ARATH3.397e-1549.48GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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