CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL58_ARATH (GDSL esterase/lipase At3g50400 OS=Arabidopsis thaliana GN=At3g50400 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDF--NGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVS 401
            Q  L A  VFGDS VDAGNNN++ T++R+N  P G DF  + G  TGRF+NG+   D + E LG +     YL P  +      GV +AS   G  NAT +V V+
Sbjct:   29 QRALAASFVFGDSLVDAGNNNYLQTLSRANSPPNGIDFKPSRGNPTGRFTNGRTIADIVGEKLGQQSYAVPYLAPNASGEALLNGVNYASGGGGILNATGSVFVN 133          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL14_ARATH (GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.436e-15
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   48 IWFLLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNAT 383
            +W LL   L F  + + ++P   +FGDS VD GNNN + ++AR+++ PYG DF G   TGRFSNG+   D ++E LG    IPAY     +  +   GV +ASAA G    T
Sbjct:   13 VWVLLLG-LGFKVKAEPQVPCYFIFGDSLVDNGNNNRLRSIARADYFPYGIDFGG--PTGRFSNGRTTVDVLTELLGFDNYIPAY--STVSGQEILQGVNYASAAAGIREET 119          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 49/144 (34.03%), Postives = 69/144 (47.92%), Query Frame = 3
Query:    3 KRDTMKKKKMAYAYLIWFLLCQFLVFVSEIQ---------AKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDF--NGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVLVS 401
            +  T  +   A+ +L+ F L      V               L A  +FGDS VDAGNNN++ T++R+N +P G DF  +GG  TGRF+NG+   D + E LG       +L P         GV +AS   G  NAT  + V+
Sbjct:    4 RASTSSRVSPAFTFLVIFFLLSLTASVEAAGRGVNNDKKGGGLGASFIFGDSLVDAGNNNYLSTLSRANMKPNGIDFKASGGTPTGRFTNGRTIGDIVGEELGSANYAIPFLAPDAKGKALLAGVNYASGGGGIMNATGRIFVN 147          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL80_ARATH (GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  117 VFGDSSVDAGNNNFIP-TVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNAT 383
            +FGDS  + GNNNF+  ++AR++F  YG DF+GG+ATGRF+NG+   D IS  LG+  + P YL  + N   F +G+ +AS   G  N T
Sbjct:   30 IFGDSLTEVGNNNFLQYSLARADFPYYGVDFSGGKATGRFTNGRTIGDIISTKLGIL-SPPPYLSLSQNDDAFLSGINYASGGAGILNET 118          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL65_ARATH (GDSL esterase/lipase At4g18970 OS=Arabidopsis thaliana GN=At4g18970 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            P   +FGDS VD+GNNN + ++AR+N+ PYG DF  G  TGRFSNGK   D I+E LG    I  Y +      D   GV +ASAA G    T   L
Sbjct:   27 PCYFIFGDSLVDSGNNNRLTSLARANYFPYGIDFQYG-PTGRFSNGKTTVDVITELLGFDDYITPYSEA--RGEDILRGVNYASAAAGIREETGRQL 120          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL17_ARATH (GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   93 QAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            QA++P + +FGDS VD GNNN + ++AR+N++PYG DF  G  TGRF+NG+   D +++ LG +  IP Y            G  FAS A G  + T + L
Sbjct:   29 QAQVPCLFIFGDSLVDNGNNNRLLSLARANYRPYGIDFPQG-TTGRFTNGRTYVDALAQILGFRNYIPPY--SRIRGQAILRGANFASGAAGIRDETGDNL 126          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   57 LLCQFLVFVSEIQAK----LPAVIVFGDSSVDAGNNNFIPT-VARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGV---KPTIPAYLDPAYNISDFATGVTFASAATG 368
            L+C  L+    + AK    +PA+  FGDS  DAGNN++     A+++F PYG  F   R TGRF+NG+   DFISE +G+   KP +   +      S+F+ G+ FASA +G
Sbjct:   10 LMCLLLLISPVVLAKSSSTVPAIFTFGDSIFDAGNNHYNKNCTAQADFPPYGSSF-FHRPTGRFTNGRTVADFISEFVGLPLQKPFLELQIQILNGTSNFSNGINFASAGSG 120          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL82_ARATH (GDSL esterase/lipase At5g45670 OS=Arabidopsis thaliana GN=At5g45670 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   45 LIWFLLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            ++  ++   ++ +++     P   +FGDS VD GNNN + ++AR+N+ PYG DF  G  TGRFSNG    D I++ LG +  I  Y   +    D   GV +ASAA G  + T   L
Sbjct:    8 IMMIMVAVTMINIAKSDPIAPCYFIFGDSLVDNGNNNQLQSLARANYFPYGIDFAAG-PTGRFSNGLTTVDVIAQLLGFEDYITPY--ASARGQDILRGVNYASAAAGIRDETGRQL 121          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL87_ARATH (GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   96 AKLPAVIVFGDSSVDAGNNNFIP-TVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLD------PAYNISDFATGVTFASAATGYDNATSNVLVSVEP 410
            A +P + VFGDS VDAGNNN++P +++++N+   G DF   + TGRF NGK A D I+E  G+ P  P YL            S   TGV FAS   G  N++   L    P
Sbjct:   35 ASIPGLYVFGDSLVDAGNNNYLPISISKANYPHNGVDFPNKKPTGRFCNGKNAADAIAEKFGL-PLPPPYLSLRGLLKREKRKSAAVTGVNFASGGAGIFNSSDQKLGQAIP 145          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GLIP5_ARATH (GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   18 KKKKMAYAYLIWFLLCQFLVFVS-EIQAKLP--------AVIVFGDSSVDAGNNNFI--PTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            K  +   +  I+F++   ++F++ +  AK+         A+ +FGDS +DAGNNN+I   T+ ++NF PYG+ F  G  TGRFS+G++ +DFI+E   + P IP +L+P  N      GV FASA  G
Sbjct:    9 KVTRRTISSFIFFIVSSTILFLAGKSSAKISHNGDNNVTALFLFGDSFLDAGNNNYINTTTLDQANFPPYGQTF-FGLPTGRFSDGRLISDFIAEYANL-PLIPPFLEPG-NSQKKLYGVNFASAGAG 133          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GDL58_ARATH3.397e-1543.81GDSL esterase/lipase At3g50400 OS=Arabidopsis thal... [more]
GDL14_ARATH4.436e-1541.96GDSL esterase/lipase At1g29660 OS=Arabidopsis thal... [more]
GDL38_ARATH1.291e-1434.03GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GDL80_ARATH2.875e-1445.56GDSL esterase/lipase At5g37690 OS=Arabidopsis thal... [more]
GDL65_ARATH3.755e-1446.39GDSL esterase/lipase At4g18970 OS=Arabidopsis thal... [more]
GDL17_ARATH1.864e-1341.58GDSL esterase/lipase At1g33811 OS=Arabidopsis thal... [more]
GLIP6_ARATH3.179e-1340.18GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]
GDL82_ARATH4.152e-1336.75GDSL esterase/lipase At5g45670 OS=Arabidopsis thal... [more]
GDL87_ARATH5.423e-1341.07GDSL esterase/lipase At5g55050 OS=Arabidopsis thal... [more]
GLIP5_ARATH7.082e-1338.28GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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