CF838834

Overview
NameCF838834
Unique NameCF838834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GLIP2_ARATH (GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=GLIP2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVA--RSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            A+ VFGDS  DAGNNN+I T+   RSN+ PYG+       TGR S+G+   DFI+E   + P IPAYL P+   + F  GV+FASA  G
Sbjct:   39 ALFVFGDSVFDAGNNNYIDTLPSFRSNYWPYGQT-TFKFPTGRVSDGRTIPDFIAEYAWL-PLIPAYLQPSNGKNQFPYGVSFASAGAG 125          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL37_ARATH (GDSL esterase/lipase At2g19060 OS=Arabidopsis thaliana GN=At2g19060 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 3
Query:   45 LIWFLLCQFLVFVSEIQAKL-PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            L+W      +V    ++ +L P   VFGDS  D GNNN + T+A+ N+ PYG DF  G  TGRFSNG+   DFI+E L +   IP +     +     TG+ +AS   G    TS  L
Sbjct:    9 LLW-AFATAVVMAEAVRGQLVPCYFVFGDSVFDNGNNNELDTLAKVNYSPYGIDFARG-PTGRFSNGRNIPDFIAEELRISYDIPPF--TRASTEQAHTGINYASGGAGLLEETSQHL 122          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL35_ARATH (GDSL esterase/lipase At2g19010 OS=Arabidopsis thaliana GN=At2g19010 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  105 PAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATGYDNATSNVL 395
            P   VFGDS  D GNNN + + A+ NF PYG DF  G  TGRFSNG+   D I E  G K  IP + + +   +   TG+ +AS  +G    TS  L
Sbjct:   25 PCFFVFGDSMSDNGNNNNLKSEAKVNFSPYGNDFPKG-PTGRFSNGRTIPDIIGELSGFKDFIPPFAEASPEQAH--TGMNYASGGSGLREETSEHL 118          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GDL63_ARATH (GDSL esterase/lipase At4g16220 OS=Arabidopsis thaliana GN=At4g16220 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 3
Query:   57 LLCQFLVFVSEIQAKLPAVIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            LL  F   V      +PA  VFGDS V+ GNNN++ T+A++N  P G DF  G  TGRF+NG+   D I +ALG     P YL P         G  +A   +G
Sbjct:   13 LLVLFFFGVCLAGKDIPANFVFGDSLVEVGNNNYLATLAKANNFPNGIDF--GSPTGRFTNGRTIVDIIYQALGSDELTPPYLAPTTRGPLILNGANYAPGGSG 114          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GLIP1_ARATH (GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=GLIP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  108 AVIVFGDSSVDAGNNNFIPTVA--RSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            A+ VFGDS  DAGNNN+I T++  RSN+ PYG+       TGR S+G++  DFI+E   + P IP  L P    S FA GV FAS   G
Sbjct:   37 ALFVFGDSVFDAGNNNYIDTLSSVRSNYWPYGQT-TFKSPTGRVSDGRLIPDFIAEYAWL-PLIPPNLQPFNGNSQFAYGVNFASGGAG 123          
BLAST of CF838834 vs. ExPASy Swiss-Prot
Match: GRIP4_ARATH (GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   87 EIQAKLPAVIVFGDSSVDAGNNNFIPTVA--RSNFQPYGRDFNGGRATGRFSNGKIATDFISEALGVKPTIPAYLDPAYNISDFATGVTFASAATG 368
            +++    A+  FGDS  +AGNNN+  +++  RSNF PYG+       TGR S+G+I  DFI+E   + P IP  L P Y+ S    G+ FA+ A G
Sbjct:   30 DLKTNQAALFAFGDSLFEAGNNNYFDSISSFRSNFWPYGKT-TFKFPTGRVSDGRIMIDFIAEYAWL-PLIPPNLQPGYSNSQLTYGLNFATTAAG 123          
The following BLAST results are available for this feature:
BLAST of CF838834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLIP2_ARATH1.208e-1249.44GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=... [more]
GDL37_ARATH2.061e-1238.98GDSL esterase/lipase At2g19060 OS=Arabidopsis thal... [more]
GDL35_ARATH2.061e-1243.30GDSL esterase/lipase At2g19010 OS=Arabidopsis thal... [more]
GDL63_ARATH3.515e-1240.38GDSL esterase/lipase At4g16220 OS=Arabidopsis thal... [more]
GLIP1_ARATH7.830e-1248.31GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=... [more]
GRIP4_ARATH6.629e-1140.63GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838834 ID=CF838834; Name=CF838834; organism=Citrus sinensis; type=EST; length=834bp
GCAAGAGAGACACTATGAAAAAAAAAAAAATGGCTTACGCATACCTCATA
TGGTTCCTTTTATGTCAGTTTCTTGTGTTTGTTTCCGAAATTCAAGCAAA
ACTTCCAGCAGTGATCGTGTTTGGAGACTCATCAGTTGATGCGGGAAACA
ATAATTTTATTCCTACGGTTGCAAGGAGCAATTTTCAGCCGTATGGTCGT
GATTTTAACGGTGGCCGTGCCACCGGAAGGTTCTCTAATGGAAAAATTGC
TACTGATTTTATTTCTGAGGCCTTAGGTGTCAAGCCAACGATTCCTGCTT
ACTTGGATCCTGCATATAATATCTCAGATTTTGCCACTGGTGTTACGTTT
GCTTCTGCTGCAACCGGCTATGATAATGCCACTTCTAATGTACTTGTAAG
TGTAGAGCCAATATTAATTACACTGTTGCTTCATACAAATATTTAGGTAC
TGGCCAACTATCATAGCCAATTTGTACACATTGATCTTCATAGTCTTCTA
TCTTCGTTAGGTTTCTATTTTTCTCTTTTGGGCTTGTTCCATATGTGAAG
CTTTTTAATATTCGTTTAAATTTGTTCGCGCAAGGGCTAATTGCTTTTAG
ATCAAACGTCCAATATTATCAATAACTTTTAAATTTGTTATTAATGATTT
GCATTGTGTCTGGTTAATTCACAGCTTTAATACAGAATAGGTGCAATTAT
TGATCGGCGATATTGCTCACTGAACAATTTTTTATTTTCGGATAATAGCT
GTAAATTAAAGTGATTTTCCTGTCTTATTTTTTGGCTTGTAGGCTGTGAT
ACCTTTGTGGAAGGAGCTGGAGTACTACAAGGAT
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