CF838835

Overview
NameCF838835
Unique NameCF838835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1282 contig Csv1_Contig1282:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.170e-55
Identity = 101/165 (61.21%), Postives = 131/165 (79.39%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFKSGAISES 755
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P  K   GA S++
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP-AKCGVGAASDA 172          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.170e-55
Identity = 101/165 (61.21%), Postives = 131/165 (79.39%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFKSGAISES 755
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P  K   GA S++
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP-AKCGVGAASDA 172          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 719
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 719
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.607e-55
Identity = 99/165 (60.00%), Postives = 131/165 (79.39%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFKSGAISES 755
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P  K   GA+ ++
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP-AKCGVGAVGDA 172          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.447e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 719
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.447e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 719
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.447e-55
Identity = 95/152 (62.50%), Postives = 122/152 (80.26%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 716
            ENLPP++I+++ KE+ +L   PPEGIK+  N++D + +   IEGP GTPY  G+FRMKL+L  DFP +PPKGYFLTKIFHPN++ NGEICVN LKKDW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  A++ T IHA+
Sbjct:    6 ENLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQ 157          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 9.908e-55
Identity = 102/176 (57.95%), Postives = 130/176 (73.86%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH---AKPKPKFKSG-AISESTTALNVD 776
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH     P  + ++G A++  T A + D
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGRAEAGRALASGTEASSTD 181          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.294e-54
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 3
Query:  261 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPK 728
            ENL P +I+Q+AKE+  L   PPEG+KV  N+ D + + A IEGP GTPYE G F++KL L  DFP +PPKG+FLTKIFHPN+A NGEICVNTLKKDW   LGL+H+L+ ++CLLI P PESALNE+AGK+LLE Y+ Y+  AR+ T IHAKP  K
Sbjct:    8 ENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHAKPTTK 163          
The following BLAST results are available for this feature:
BLAST of CF838835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
UBE2S_DROPS1.170e-5561.21Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.170e-5561.21Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROYA1.529e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER1.529e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DROME2.607e-5560.00Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBE2S_DROSI4.447e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE4.447e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UB2SC_XENLA4.447e-5562.50Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2S_HUMAN9.908e-5557.95Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BRAFL1.294e-5462.18Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838835 ID=CF838835; Name=CF838835; organism=Citrus sinensis; type=EST; length=845bp
TTTTCAACGTTCATTTTTACATCTCTCTCCTCTCTCTCACACTCGCTCTC
CCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATCAGACAAG
GTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCTTTAAGTT
CAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTGCCAGTGA
CAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTGTTGACAT
GGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTTGCTAAGG
AATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGTAGGCGTA
AATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCCCAGCTGG
AACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTATCTCATG
ACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGATATTCCAT
CCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAAAAAAAGA
TTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTCCGGTGTT
TATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGCTGGTAAG
ATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGATTTACAC
TGGGATTCATGCAAAGCCAAAACCAAAATTCAAGTCAGGAGCTATTTCTG
AATCAACAACGGCACTGAATGTTGACCAGACTATCACCAACATGGACCAG
AAGAACAACACACCATCTGGTGGCGCAATACCATTGCCATTTGGC
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