CF838835

Overview
NameCF838835
Unique NameCF838835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16
Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  264 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            N+  + IK+  KE+   +E     IK+ + +D ++ +  +I GP  TPYE G F +++ +   +P +PPK  F+T+I+HPNI++  G IC++ LK +W  ++ LR VL+ ++ LL    P+   +        + Y+ +   A+ +T  +A
Sbjct:    3 NMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYA 153          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16
Identity = 51/169 (30.18%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  264 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPK---------------GYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPK 722
            NL    + +  KE+ +  +    GI V + +++   I   I+GP GTPY  G F +K+ +   +P  PPK                 F+T+I+HPNI++  G IC++ LK  W  SL LR VL+ ++ +L  P P    +    K  + NY  +   A  +T   A  K
Sbjct:   17 NLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFANSK 185          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.386e-16
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKV--GVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIA-TNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKML-LENYEEYARHARIYTGIHAKPK 722
            IK+L KE  S       G+ +   V D D     A IEGP  TPYE G + + + +   +P SPP  YF TKI HPNI+ TNGE+C++ LK  W+P+  L+   + +  LL      S LN  A K+L   +   Y    R  T ++AK K
Sbjct:    5 IKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.116e-16
Identity = 51/146 (34.93%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  246 DMATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            DM T++    +V K+L +EL++L  S   GI    + D+     A ++GP  T YE+  +++ L    D+P+ PP   F T  +HPN+  +G IC++ LK++W  S  +R +L+ ++ LL EP   S LN QA  M   N  EY +
Sbjct:   21 DMTTSKERH-SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADM-WSNQTEYKK 164          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.116e-16
Identity = 46/137 (33.58%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  291 LAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD--------WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEY 677
            L  E K+L  +P E  K+ VN+D+ +     ++GP  T YE G+F+ K++    +P+ PP+  F ++++HPNI ++G++C++ L  D        W+P+  +  VL+ V  LL EP P+S  N  A K    +Y +Y
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAK----SYRKY 138          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  279 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD--------WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEY 677
            V + L  E + L E+P E  K+ VN+++ +     + GP  T YE G+F+ K+    ++P++PPK  F ++++HPNI  +G +C++ L  D        W+P+  +  +L+ V  LL EP P+S  N  A K    +Y +Y
Sbjct:    2 VSRFLIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAK----SYRKY 138          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  408 YENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            Y+ G FR    ++ +FPH PPK   L K++HPNI   G +C+N L++DW P L L  V+I ++ L +EP     LN+ A   +  N EE+ R+ +
Sbjct:   66 YQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.066e-16
Identity = 45/144 (31.25%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V + + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  279 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD--------WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGK-----MLLENYEEY 677
            V + L  E ++L E+P E  KV VN+++ +     ++GP+ T YE G+F+ K+    ++P+ PPK  F ++++HPNI  +G +C++ L  D        W+P+  +  VL+ V  L  EP  +S  N  A K     M  E+ E Y
Sbjct:    2 VSRFLLTEYRNLTENPSEHFKVSVNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESY 147          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of CF838835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
UBCD4_DROME1.827e-1630.46Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC21_CAEEL1.827e-1630.18Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC16_SCHPO2.386e-1637.75Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2C_SPISO3.116e-1634.93Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC_ASFM23.116e-1633.58Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFB74.069e-1632.62Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC12_YARLI4.069e-1638.95NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9A_DANRE9.066e-1631.25SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC_ASFK51.184e-1532.88Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_XENTR1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838835 ID=CF838835; Name=CF838835; organism=Citrus sinensis; type=EST; length=845bp
TTTTCAACGTTCATTTTTACATCTCTCTCCTCTCTCTCACACTCGCTCTC
CCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATCAGACAAG
GTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCTTTAAGTT
CAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTGCCAGTGA
CAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTGTTGACAT
GGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTTGCTAAGG
AATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGTAGGCGTA
AATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCCCAGCTGG
AACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTATCTCATG
ACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGATATTCCAT
CCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAAAAAAAGA
TTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTCCGGTGTT
TATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGCTGGTAAG
ATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGATTTACAC
TGGGATTCATGCAAAGCCAAAACCAAAATTCAAGTCAGGAGCTATTTCTG
AATCAACAACGGCACTGAATGTTGACCAGACTATCACCAACATGGACCAG
AAGAACAACACACCATCTGGTGGCGCAATACCATTGCCATTTGGC
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