CF838835

Overview
NameCF838835
Unique NameCF838835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFAD----IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            + +LA+E K+  +  P G + V   + D +    +    I G  GTP+E G+F++++L   D+P SPPK  F   +FHPN+  +G +C++ L+  KDW P++ ++ +L+ ++ LL EP  +     +A  +  +N  EY +  R
Sbjct:    6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  330 EGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD-WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 716
            +  ++ + D++      +I+GP  + YEN  F +++ LS+D+P+S PK  F+T I H N+   G+IC+N LKKD WN SL +  ++  +  LL +P PE   N +   +   +   Y +  R Y   H+K
Sbjct:   25 DSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHSK 154          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.546e-15
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  258 NEN---LPPNVIK---QLAKELKSLDESPPEGIKVGVNDDDF----STIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARI 695
            NEN   + PN+     +L ++L SLD  P   + V  + D      S     I  P    Y  G     L  +  +P  PPK   L KIFHPNI   G +C+N L++DW+P+L L+ ++  +  L +EP P   LN+ A K+L E  +E+A   R+
Sbjct:   15 NENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRL 170          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  279 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD--------WNPSLGLRHVLIVVRCLLIEPFPESALNEQAGK 650
            V + L  E + L E+P E  KV VN+++ +     ++GPA T YE G+F+ K+    ++P+ PP+  F ++++HPNI ++G +C++ L  D        W+P   +  +L+ V  LL EP  +S  N  A K
Sbjct:    2 VSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAK 133          
The following BLAST results are available for this feature:
BLAST of CF838835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
UBC9_XENLA1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.184e-1531.25SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.184e-1531.25SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC1_MIMIV1.184e-1533.08Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC12_YEAST1.546e-1533.97NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC_ASFP42.638e-1533.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838835 ID=CF838835; Name=CF838835; organism=Citrus sinensis; type=EST; length=845bp
TTTTCAACGTTCATTTTTACATCTCTCTCCTCTCTCTCACACTCGCTCTC
CCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATCAGACAAG
GTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCTTTAAGTT
CAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTGCCAGTGA
CAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTGTTGACAT
GGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTTGCTAAGG
AATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGTAGGCGTA
AATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCCCAGCTGG
AACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTATCTCATG
ACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGATATTCCAT
CCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAAAAAAAGA
TTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTCCGGTGTT
TATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGCTGGTAAG
ATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGATTTACAC
TGGGATTCATGCAAAGCCAAAACCAAAATTCAAGTCAGGAGCTATTTCTG
AATCAACAACGGCACTGAATGTTGACCAGACTATCACCAACATGGACCAG
AAGAACAACACACCATCTGGTGGCGCAATACCATTGCCATTTGGC
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