CF838835

Overview
NameCF838835
Unique NameCF838835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  S ++P+ PP   FL+K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  S ++P+ PP   FL+K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  S ++P+ PP   FL+K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 48/133 (36.09%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  S ++P+ PP   FL+K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 3
Query:  258 NENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            N NLP  +IK    E + L   P  GI    ++D+       I GP  +PYE GVF+++L L  ++P + PK  FLTKI+HPNI   G IC++ LK  W+P+L +R VL+ ++ LL  P P+  L+E   K    N  E    A+ +T ++A
Sbjct:    3 NSNLPRRIIK----ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYA 150          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            K+L ++ K L   PP GI     D++     A I GP  TP++ G F++ L  S D+P+ PP   F++++FHPNI  +G IC++ L+  W+P   +  +L  ++ LL +P P S  N +A +M  EN  EY R  R
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 142          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.000e-22
Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            K+L ++ K L + PP GI    +D++ +   A I GP  TP++ G F++ L  + D+P+ PP   F++++FHPNI  +G IC++ L+  W+P   +  +L  ++ LL +P P S  N +A +M  EN  EY R  R
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVR 142          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 3
Query:  258 NENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            N NLP  +IK    E + L   P  GI    ++++       I GP  +PYE GVF+++L L  ++P + PK  FLTKI+HPNI   G IC++ LK  W+P+L +R VL+ ++ LL  P P+  L+E   K    N  E    A+ +T ++A
Sbjct:    3 NSNLPRRIIK----ETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYA 150          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.306e-22
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 692
            K+L ++ K L   PP GI      D+     A I GPA TP+E+G F++ L     +P+ PP   FL+K+FHPN+  NGE+C++ L+  W+P+  +  +L  ++ LL +P P S  N +A  +  EN +EY R  +
Sbjct:    7 KRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.706e-22
Identity = 46/133 (34.59%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 683
            ++L ++ K L E PP G+    ++++     A I GP GTP+E+G F++ +  + ++P+ PP   F++K+FHPN+  +G IC++ L+  W+P+  +  +L  ++ LL EP P S  N QA ++  EN  EY +
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
The following BLAST results are available for this feature:
BLAST of CF838835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
UBE2B_RABIT7.657e-2336.09Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE7.657e-2336.09Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN7.657e-2336.09Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN7.657e-2336.09Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC35_ARATH7.657e-2338.16Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC2_MEDSA7.657e-2336.76Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_WHEAT1.000e-2236.03Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC36_ARATH1.306e-2237.50Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC2_USTMA1.306e-2236.76Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBE2A_MOUSE1.706e-2234.59Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838835 ID=CF838835; Name=CF838835; organism=Citrus sinensis; type=EST; length=845bp
TTTTCAACGTTCATTTTTACATCTCTCTCCTCTCTCTCACACTCGCTCTC
CCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATCAGACAAG
GTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCTTTAAGTT
CAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTGCCAGTGA
CAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTGTTGACAT
GGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTTGCTAAGG
AATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGTAGGCGTA
AATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCCCAGCTGG
AACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTATCTCATG
ACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGATATTCCAT
CCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAAAAAAAGA
TTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTCCGGTGTT
TATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGCTGGTAAG
ATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGATTTACAC
TGGGATTCATGCAAAGCCAAAACCAAAATTCAAGTCAGGAGCTATTTCTG
AATCAACAACGGCACTGAATGTTGACCAGACTATCACCAACATGGACCAG
AAGAACAACACACCATCTGGTGGCGCAATACCATTGCCATTTGGC
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