CF838835

Overview
NameCF838835
Unique NameCF838835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.800e-22
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            K++ KELK L + PP     G   +D     A I GP  +PY  GVF + +    D+P  PPK  F TK+FHPNI +NG IC++ LK+ W+P+L +  VL+ +  LL +P P+  L  +   M   +  +Y   AR +T  +A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.800e-22
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            K++ KELK L + PP     G   +D     A I GP+ +PY  GVF + +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W+P+L +  VL+ +  LL +P P+  L  +   M   +  +Y   AR +T  +A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.800e-22
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            K++ KELK L + PP     G   +D     A I GP+ +PY  GVF + +    D+P  PPK  F TK+FHPNI +NG IC++ LK+ W+P+L +  VL+ +  LL +P P+  L  +   M   +  +Y   AR +T  +A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.465e-22
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            K++ KELK L + PP     G   +D     A I GP  +PY  GVF + +    D+P  PPK  F TK++HPNI +NG IC++ LK+ W+P+L +  VL+ +  LL +P P+  L  +   M   +  +Y   AR +T  +A
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  282 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            +K++ KEL  L   PP     G   DD     A I GP  +PY+ GVF + +    D+P  PPK  F T+I+HPNI +NG IC++ L+  W+P+L +  VL+ +  LL +P P+  L  +  ++   + E+Y R AR +T  +A
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CF838835 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  285 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHA 713
            K++AKEL  L+  PP     G   DD     A I GPA +PY  GVF + +    D+P  PPK  F TKI+HPNI  NG IC++ LK  W+P+L L  VL+ +  LL +  P+  L  +   +   +  +Y   AR +T  +A
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
The following BLAST results are available for this feature:
BLAST of CF838835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
UBC4_SOLLC3.800e-2237.76Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH3.800e-2237.06Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.800e-2237.76Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC11_ARATH8.465e-2237.06Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D2_XENLA1.106e-2136.81Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.106e-2136.81Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.106e-2136.81Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.106e-2136.81Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.106e-2136.81Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_YEAST1.444e-2138.46Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838835 ID=CF838835; Name=CF838835; organism=Citrus sinensis; type=EST; length=845bp
TTTTCAACGTTCATTTTTACATCTCTCTCCTCTCTCTCACACTCGCTCTC
CCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATCAGACAAG
GTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCTTTAAGTT
CAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTGCCAGTGA
CAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTGTTGACAT
GGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTTGCTAAGG
AATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGTAGGCGTA
AATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCCCAGCTGG
AACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTATCTCATG
ACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGATATTCCAT
CCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAAAAAAAGA
TTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTCCGGTGTT
TATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGCTGGTAAG
ATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGATTTACAC
TGGGATTCATGCAAAGCCAAAACCAAAATTCAAGTCAGGAGCTATTTCTG
AATCAACAACGGCACTGAATGTTGACCAGACTATCACCAACATGGACCAG
AAGAACAACACACCATCTGGTGGCGCAATACCATTGCCATTTGGC
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