CF838837

Overview
NameCF838837
Unique NameCF838837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838837 vs. ExPASy Swiss-Prot
Match: VDAC_NEUCR (Mitochondrial outer membrane protein porin OS=Neurospora crassa GN=B7H23.070 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 63/240 (26.25%), Postives = 103/240 (42.92%), Query Frame = 3
Query:   33 YTDIGKKARDLLYKDYQSDHKFTITTYS--PTGVAITSSGTKKGELFLADV---NTQLKNKNITTDLKVDTASNLFTTITV-DEPAPGLKT--ILSF-KVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTI--TVGTQHILDPLTTLKARVNNAGIAS 719
            ++DI K A DLL KD+      TI   S  P  VA   +G    +   +         K   +T     +TA+ L T + + D  A GLK   I SF    + R  K  L +            L   P  N  A++G      G    +D +    T  +A + ++     A++   +     +ASYYH VN     G++   + S T NT+   V T++ +DP++ +K ++N+ G+A+
Sbjct:    6 FSDIAKSANDLLNKDFYHLAAGTIEVKSNTPNNVAFKVTGKSTHDKVTSGALEGKFTDKPNGLTVTQTWNTANALETKVEMADNLAKGLKAEGIFSFLPATNARGAKFNLHFKQSNFHGRAFFDLLKGPTANIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVNSQVEAGSKATWN-SKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAA 244          
BLAST of CF838837 vs. ExPASy Swiss-Prot
Match: VDAC3_RAT (Voltage-dependent anion-selective channel protein 3 OS=Rattus norvegicus GN=Vdac3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 71/277 (25.63%), Postives = 118/277 (42.60%), Query Frame = 3
Query:   33 YTDIGKKARDLLYKDYQSDH-KFTITTYSPTGVAITSSGTKKGELFLADVNTQLK----NKNITTDLKVDTASNLFTTITVDEP-APGLK-TILSFKVPD--QRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVXHQAIEKSA-KFGLALALK 830
            Y D+GK A+D+  K Y     K  + T S +GV  ++SG    +   A  N + K    N  +    K +T + L T I+ +   A GLK T+ +  VP+  ++SGK++  Y  D   + + V +  + P +   AV+       G  +SFD+      + N  L +   D     ++N+ G     S Y  VN        +  +  + +    +  ++ LD  T+L A+VNNA +         RP    T+S  V  +       K GL   L+
Sbjct:    7 YCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLETKYKVCNYGLIFTQKWNTDNTLGTEISWENKLAEGLKLTVDTIFVPNTGKKSGKLKASYRRDCFSVGSKVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLCQNNFALGYKAEDFQLHTHVND-GTEFGGSIYQRVNEKIETSINLAWTAGSNNTRFGIAAKYRLDCRTSLSAKVNNASLIGLGYTQSLRPGVKLTLSALVDGKNFNAGGHKVGLGFELE 282          
BLAST of CF838837 vs. ExPASy Swiss-Prot
Match: VDAC_SCHPO (Probable mitochondrial outer membrane protein porin OS=Schizosaccharomyces pombe GN=SPAC1635.01 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 68/278 (24.46%), Postives = 119/278 (42.81%), Query Frame = 3
Query:   24 PGLYTDIGKKARDLLYKDYQSDHKF-TITTYSPTGVAITSSGTKKGE-LFLADVNTQLKNK--NITTDLKVDTASNLFTTITVDEP-APGLKTILSFKVPDQRSGK---VELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTIT--VGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVXHQAIEKSA-KFGLALA 824
            P  Y  I K   DLL +D+       ++ T +P GV    SG +  + +    + T   +K   +T      TA+ L + + + E  APGL   ++       + K   + L++ H       SV       +     +G      G +  +D + GN +   A + +  + L  +L  +N      ASYYH V+     G  V    ++T N IT  + +++ LD  T +K ++N+AG+A+       RP     +  ++  Q + + A K GL+LA
Sbjct:    3 PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFNVSGNQDAKGVISGKLETSFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLG-DFTVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSLA 279          
The following BLAST results are available for this feature:
BLAST of CF838837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
VDAC_NEUCR2.325e-1126.25Mitochondrial outer membrane protein porin OS=Neur... [more]
VDAC3_RAT2.325e-1125.63Voltage-dependent anion-selective channel protein ... [more]
VDAC_SCHPO3.036e-1124.46Probable mitochondrial outer membrane protein pori... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838837 ID=CF838837; Name=CF838837; organism=Citrus sinensis; type=EST; length=850bp
AAAATTCAATCATGGGCAAGGGTCCTGGTCTCTACACTGATATTGGCAAA
AAAGCCAGAGATCTTTTGTACAAGGATTATCAGAGCGACCACAAGTTCAC
TATCACTACCTACTCTCCGACTGGAGTTGCTATTACATCATCTGGAACGA
AAAAGGGTGAGCTGTTTCTAGCTGATGTTAATACCCAGCTGAAGAACAAG
AATATCACAACTGATCTCAAAGTGGACACTGCCTCCAATCTTTTCACAAC
TATCACTGTTGATGAACCTGCTCCTGGGCTGAAAACGATCCTAAGCTTCA
AAGTTCCAGATCAAAGGTCTGGCAAGGTTGAACTCCAGTATTTGCATGAT
TATGCGGGGATAAGCACAAGTGTCGGCTTAACAGCGAATCCTATTGTTAA
CTTCTCGGCTGTGATTGGTACTAATGTTCTCTCTCTTGGTACTGATCTGT
CATTTGACTCCAAATCTGGGAACTTCACTAAATGCAATGCTGGTCTGAGC
TTCAACAATGCCGACCTTATTGCTTCATTGAATTTGAACAACAAAGGTGA
TTCCCTGGCTGCATCCTACTACCACTTTGTTAATCCCTTGACAGCTGTTG
GTGCAGAAGTAATCCATAGCTTCTCAACCACTGACAATACCATCACTGTT
GGGACCCAGCACATATTAGATCCACTGACCACATTGAAGGCGCGAGTGAA
CAATGCTGGCATTGCTAGTGCTCTCATCCAGCATGAGTGGCGTCCAAAGT
CGTTGTTCACCATTTCTGGTGAGGTGGNACACCAGGCCATTGAGAAGAGT
GCCAAATTTGGACTGGCATTGGCTCTAAAGCCATAGTTGAGAGCTTGGTA
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