CF838858

Overview
NameCF838858
Unique NameCF838858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 58/159 (36.48%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG ++    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO7I (Carnitine operon protein caiE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAISFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
The following BLAST results are available for this feature:
BLAST of CF838858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_SALA46.442e-2236.48Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_ECOUT6.442e-2236.97Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLU6.442e-2234.46Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL66.442e-2236.97Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL56.442e-2236.97Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOK16.442e-2236.97Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO816.442e-2234.46Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO456.442e-2236.97Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO276.442e-2234.46Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO7I8.414e-2234.46Carnitine operon protein caiE OS=Escherichia coli ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838858 ID=CF838858; Name=CF838858; organism=Citrus sinensis; type=EST; length=840bp
CAAAACCTCACTCAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGA
TCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCG
TTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGC
CGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAAC
TCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTG
TTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCA
TCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGT
TGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGT
CTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACT
GTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTT
TGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATG
GCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCT
GGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGA
TGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG
CACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTT
GAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTC
AATGCTCGGTGTTGTTCGTGAAACTCCTCAAGAAATTATT
back to top