CF838858

Overview
NameCF838858
Unique NameCF838858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 59/159 (37.11%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702
            P V  DAFV PSA +IGDV VG G  I     LRGD     + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 717
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
The following BLAST results are available for this feature:
BLAST of CF838858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_SALCH1.099e-2137.11Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_ECOSM1.435e-2136.36Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO5E1.435e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO571.435e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHISS2.448e-2133.90Carnitine operon protein caiE OS=Shigella sonnei (... [more]
CAIE_ECOLI2.448e-2136.71Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOHS2.448e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECODH2.448e-2136.71Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOBW2.448e-2136.71Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO8A2.448e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838858 ID=CF838858; Name=CF838858; organism=Citrus sinensis; type=EST; length=840bp
CAAAACCTCACTCAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGA
TCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCG
TTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGC
CGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAAC
TCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTG
TTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCA
TCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGT
TGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGT
CTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACT
GTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTT
TGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATG
GCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCT
GGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGA
TGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG
CACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTT
GAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTC
AATGCTCGGTGTTGTTCGTGAAACTCCTCAAGAAATTATT
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